Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

2 accessions found for Bifidobacterium longum NCC2705  

Data for AE014295  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: AE014295.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE014295_0656 CDS_835547-834015 131.1 1.7e-37 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE014295_0656 1/1 307 390 .. 1 94 [] 131.1 1.7e-37

Alignments of top-scoring domains:
AE014295_0656: domain 1 of 1, from 307 to 390: score 131.1, E = 1.7e-37
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ +S+LLrLQark+k+ ev ++ L+E+q+RV++
AE014295_0 307 EIHHRVKNNLQAVSALLRLQARKTKSDEV-----KKELQEAQRRVQT 348

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+A++HE L+++ d + vdf+ ++ +L++ ++++ ++++i+ +
AE014295_0 349 IAMVHEGLSQTAD-EVVDFDKVIANLLRMAVDLATMKDQHID----I 390


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-15 2 0|=
-14 7 0|=
-13 16 10|=*
-12 87 113|=========== *
-11 397 315|=======================================*==========
-10 424 408|==================================================*==
-9 292 345|===================================== *
-8 201 231|========================== *
-7 115 137|=============== *
-6 109 76|=========*====
-5 33 41|=====*
-4 14 21|==*
-3 18 11|=*=
-2 3 5|*
-1 4 3|*
0 2 1|*
1 1 0|=
2 0 0|
3 0 0|
> 4 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 67.9032
P(chi-square) = 1.124e-10

Total sequences searched: 1727

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: