Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
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Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

2 accessions found for Shewanella oneidensis MR-1  

Data for AE014299  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE014299.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE014299_0848 CDS_882701-887998 103.2 7.8e-29 1
AE014299_0570 CDS_599381-602947 97.9 2.4e-27 1
AE014299_3363 CDS_3601960-3604749 92.5 8.1e-26 1
AE014299_3889 CDS_4143752-4138683 85.1 1e-23 1
AE014299_4323 CDS_4632770-4636195 78.5 7.4e-22 1
AE014299_1529 CDS_1635254-1636552 78.4 8e-22 1
AE014299_1211 CDS_1278074-1281151 77.0 2e-21 1
AE014299_4268 CDS_4583032-4584534 66.4 2e-18 1
AE014299_0060 CDS_68142-67096 65.4 3.8e-18 1
AE014299_2487 CDS_2675965-2679024 64.9 5.3e-18 1
AE014299_4349 CDS_4659592-4660638 61.7 4.3e-17 1
AE014299_3143 CDS_3371249-3370167 52.6 1.7e-14 1
AE014299_2147 CDS_2305501-2303438 51.0 4.7e-14 1
AE014299_4356 CDS_4665827-4667176 50.1 8.6e-14 1
AE014299_2065 CDS_2202308-2203738 49.9 9.8e-14 1
AE014299_3495 CDS_3757362-3758684 49.0 1.8e-13 1
AE014299_4589 CDS_4922524-4920395 48.8 1.9e-13 1
AE014299_2683 CDS_2861728-2858291 48.1 3.1e-13 1
AE014299_4507 CDS_4829525-4830841 47.4 4.8e-13 1
AE014299_0538 CDS_564464-566617 45.4 1.8e-12 1
AE014299_4511 CDS_4835023-4836315 43.3 7.3e-12 1
AE014299_3217 CDS_3458709-3455194 38.0 2.3e-10 1
AE014299_1395 CDS_1475582-1473777 33.3 5e-09 1
AE014299_4305 CDS_4619087-4617831 29.9 4.6e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE014299_0848 1/1 1039 1104 .. 1 87 [] 103.2 7.8e-29
AE014299_0570 1/1 673 738 .. 1 87 [] 97.9 2.4e-27
AE014299_3363 1/1 294 359 .. 1 87 [] 92.5 8.1e-26
AE014299_3889 1/1 955 1020 .. 1 87 [] 85.1 1e-23
AE014299_4323 1/1 561 626 .. 1 87 [] 78.5 7.4e-22
AE014299_1529 1/1 205 271 .. 1 87 [] 78.4 8e-22
AE014299_1211 1/1 507 572 .. 1 87 [] 77.0 2e-21
AE014299_4268 1/1 282 349 .. 1 87 [] 66.4 2e-18
AE014299_0060 1/1 127 195 .. 1 87 [] 65.4 3.8e-18
AE014299_2487 1/1 558 622 .. 1 87 [] 64.9 5.3e-18
AE014299_4349 1/1 126 191 .. 1 87 [] 61.7 4.3e-17
AE014299_3143 1/1 136 202 .. 1 87 [] 52.6 1.7e-14
AE014299_2147 1/1 466 531 .. 1 87 [] 51.0 4.7e-14
AE014299_4356 1/1 235 297 .. 1 87 [] 50.1 8.6e-14
AE014299_2065 1/1 261 327 .. 1 87 [] 49.9 9.8e-14
AE014299_3495 1/1 218 287 .. 1 87 [] 49.0 1.8e-13
AE014299_4589 1/1 467 534 .. 1 87 [] 48.8 1.9e-13
AE014299_2683 1/1 783 849 .. 1 87 [] 48.1 3.1e-13
AE014299_4507 1/1 233 293 .. 1 87 [] 47.4 4.8e-13
AE014299_0538 1/1 494 562 .. 1 87 [] 45.4 1.8e-12
AE014299_4511 1/1 220 291 .. 1 87 [] 43.3 7.3e-12
AE014299_3217 1/1 830 888 .. 1 87 [] 38.0 2.3e-10
AE014299_1395 1/1 373 434 .. 1 81 [. 33.3 5e-09
AE014299_4305 1/1 208 272 .. 1 87 [] 29.9 4.6e-08

Alignments of top-scoring domains:
AE014299_0848: domain 1 of 1, from 1039 to 1104: score 103.2, E = 7.8e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++flan+sHE+RTP++aI+g+++l+l t l+ +q
AE014299_0 1039 AKGDFLANMSHEIRTPMNAIIGMSQLCLQ---------TQLDKKQ-- 1074

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yle+i+r++++ll++ind+Ld+s+ieag
AE014299_0 1075 ----------KNYLEKIERASQSLLSIINDILDFSKIEAG 1104

AE014299_0570: domain 1 of 1, from 673 to 738: score 97.9, E = 2.4e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHE+RTP++aI+g+++l+++ t l+++q
AE014299_0 673 YKSEFLANMSHEIRTPMNAIIGMLQLAQR---------TSLTAQQ-- 708

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yle++ +a++llr+ind+Ld+s+ieag
AE014299_0 709 ----------KDYLEKAGFSAQSLLRIINDILDFSKIEAG 738

AE014299_3363: domain 1 of 1, from 294 to 359: score 92.5, E = 8.1e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g+a L + t+l + q
AE014299_3 294 IKSEFLANMSHELRTPLNGVIGFARQLVK---------TPLHSSQ-- 329

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ti+r+a ll++ind+Ld+s++eag
AE014299_3 330 ----------VDYINTIERSATNLLAIINDILDFSKLEAG 359

AE014299_3889: domain 1 of 1, from 955 to 1020: score 85.1, E = 1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTP++aI+g++ l+l t+l e+
AE014299_3 955 AKSDFLANMSHEIRTPMNAIIGMSYLALQ---------TDLAEKR-- 990

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+ +++++a +ll++ind+Ld+s+iea+
AE014299_3 991 ----------KDYIAKVHQAAGSLLNIINDILDFSKIEAN 1020

AE014299_4323: domain 1 of 1, from 561 to 626: score 78.5, E = 7.4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k efla++sHE+RTP++++ g+ae L t+l+ eq
AE014299_4 561 RKAEFLAAMSHEIRTPMNGLVGMAEQLSF---------TPLGIEQ-- 596

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++i + ae +l++in++Ld+s+i+ g
AE014299_4 597 ----------KQMVQIISNGAEEILQIINNILDFSKIDMG 626

AE014299_1529: domain 1 of 1, from 205 to 271: score 78.4, E = 8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ef+an+sHEL+TPLt+++gy+e+++ + ++ +
AE014299_1 205 MRKEFVANVSHELKTPLTVLQGYLEMMQS---------MAEPDSMN- 241

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l ++++++r+++++++lL lsrie
AE014299_1 242 ----------AKPLALMQQQTQRMQSMVEQLLVLSRIEDA 271

AE014299_1211: domain 1 of 1, from 507 to 572: score 77.0, E = 2e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTPL++++g++ lL + l++ q
AE014299_1 507 AKSQFLATMSHEIRTPLNGLLGTLTLLGQ---------SQLPPAQ-- 542

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l + ++ l+ ++d+Ld+sr+e+g
AE014299_1 543 ----------QQMLALSQYSGTLLQTVLSDILDFSRLEQG 572

AE014299_4268: domain 1 of 1, from 282 to 349: score 66.4, E = 2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+ +sHEL+TPLt I +yae+L e e+ e +++
AE014299_4 282 QQVSFVGQVSHELKTPLTNITLYAEMLNE---------MEAEENDQR 319

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl +i++e++rl+rLi+++L+++++ +
AE014299_4 320 ----------AHYLGVIISESQRLSRLIQNVLTFTKLPQI 349

AE014299_0060: domain 1 of 1, from 127 to 195: score 65.4, E = 3.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ l ++sH+LRTPL++I+g++ +L+e++ ++ls+ q+
AE014299_0 127 LRNSILLSVSHDLRTPLATIIGTLTTLKEYQ-------PKLSPAQT- 165

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++++ e++rl + i++lL+ ++++g
AE014299_0 166 ----------EELIDSAAAESHRLHQYIENLLQANKLQHG 195

AE014299_2487: domain 1 of 1, from 558 to 622: score 64.9, E = 5.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k +flan+sHE+RTP+t I+g++e +l + e
AE014299_2 558 VKARFLANMSHEIRTPITIIKGFTEQILP----------NTQGEV-- 592

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l +i++ + +l++ ind+Ld ++i++g
AE014299_2 593 ----------HNALCKIEQNTLHLQNVINDILDAAKIDEG 622

AE014299_4349: domain 1 of 1, from 126 to 191: score 61.7, E = 4.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + +++nl+HE+++PL ++rg+a+lL + el+++ +
AE014299_4 126 AAQFLVRNLAHEIKNPLGGLRGAAQLLSR----------ELDDPAQ- 161

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++ i+++a+rl++L+++lL r +
AE014299_4 162 ----------KEFTNLIIEQADRLRSLVDRLLGPQRPTQH 191

AE014299_3143: domain 1 of 1, from 136 to 202: score 52.6, E = 1.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+l+H+ RTPL+a ++ya L ++ls+ +
AE014299_3 136 ALGKMVATLAHQVRTPLSAALLYAANLAS---------PKLSDSAK- 172

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++ + ++ l+r++nd+L +++ ++
AE014299_3 173 ----------VKFQQKLVDRLNELERQVNDMLLMAKGRQD 202

AE014299_2147: domain 1 of 1, from 466 to 531: score 51.0, E = 4.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + + lsHELRTP++++r +e L ++l+ ++
AE014299_2 466 YLENMSSRLSHELRTPVAVVRSSLEHLNL---------QTLDKDT-- 501

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++++++ + rl+ ++n++ + +r+e+
AE014299_2 502 ----------QKYVDRAQEGVSRLSMILNNMSEATRLEQS 531

AE014299_4356: domain 1 of 1, from 235 to 297: score 50.1, E = 8.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++ ++sHELRTPLt +++ + l+++ + ++ e+
AE014299_4 235 NQQRLMGDISHELRTPLTRLQLSLALARK--------KGQQTTET-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++i eae+l++Li +lL+lsr
AE014299_4 272 --------------DRIAYEAEQLEQLIAELLELSRVKLS 297

AE014299_2065: domain 1 of 1, from 261 to 327: score 49.9, E = 9.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f a+++HEL+TPL++I+++ + L+ +++ +
AE014299_2 261 RERRFSADAAHELKTPLSVIKLHQQGLEG---------LVGDDPAQ- 297

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l i+ ++++++ +++lL l+r ++
AE014299_2 298 ----------HIHLAAIDAGVKHMSHTVEQLLLLARVDSI 327

AE014299_3495: domain 1 of 1, from 218 to 287: score 49.0, E = 1.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++sHE+RTPL+ +++++ l+ ++ + s+eq++
AE014299_3 218 NQKHLSNAVSHEIRTPLARLKFALALMPMYC-------KPDSDEQTR 257

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ ++ +++ +++L+++lL+++ +e++
AE014299_3 258 ----------QDFLNEMQLDIKEMENLLQELLTYASLESQ 287

AE014299_4589: domain 1 of 1, from 467 to 534: score 48.8, E = 1.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a+++HE+++P ++I+g+ elL+ el +++ e
AE014299_4 467 ALGELTAGIAHEINNPTAVILGNMELLRYEL-------GDKAEVV-- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++ +++++ r++ +i+ lL++sr ++
AE014299_4 505 ----------KEEIDLVIQQVGRISTIIRSLLQYSRPGEF 534

AE014299_2683: domain 1 of 1, from 783 to 849: score 48.1, E = 3.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++ H+L +PL+a r+++ L +++l+ e
AE014299_2 783 SKSRFLAAVGHDLMQPLNAARLFTASLSQ--------YPNLDREA-- 819

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+ + ++++ +L+ dlLd+s++++g
AE014299_2 820 ----------RTTLSHVNSSLKTAGELLTDLLDISKLDSG 849

AE014299_4507: domain 1 of 1, from 233 to 293: score 47.4, E = 4.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a++sH+LRTPLt Ir+++e++ e ++q
AE014299_4 233 DRALLMAGISHDLRTPLTRIRLASEMMVE-------------DDQ-- 264

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i +++e ++++i+++ + r +++
AE014299_4 265 -----------YLKDGIVNDIEDMDAIISQFIAYIRQDQE 293

AE014299_0538: domain 1 of 1, from 494 to 562: score 45.4, E = 1.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L+ PL +I ++ L e+l + + e +
AE014299_0 494 ELDRFAYIASHDLKSPLRGIEQLTTWLSEDL-------VDNTNENV- 532

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl i++ ++r+ rL++ lL++sri+
AE014299_0 533 ----------QKYLGLIQNRIQRMVRLLDGLLTFSRIGRV 562

AE014299_4511: domain 1 of 1, from 220 to 291: score 43.3, E = 7.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +ef + +sHELRTP+ +I+g +elL++ ++e q++
AE014299_4 220 REQEFSRFASHELRTPIMVIQGSTELLKK-------LPNSANEAQQR 259

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ +i+ +++++ L + +L l + + +
AE014299_4 260 IA--------NKAIARIDYAGQQMKTLTETFLLLGKEQIE 291

AE014299_3217: domain 1 of 1, from 830 to 888: score 38.0, E = 2.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++f+a++sH+L+ P+ Ir+ +e +++
AE014299_3 830 AKTRFIAAASHDLKHPIGLIRLQLEQIED------------------ 858

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +i ++ l++L++ + +lsr++a
AE014299_3 859 ----------NKLSYKINTSLSFLEQLVSSIVELSRLDAR 888

AE014299_1395: domain 1 of 1, from 373 to 434: score 33.3, E = 5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e++++++HEL++PL++Ir +++ +l +l ++ +e
AE014299_1 373 LTGEMASGIAHELKQPLAGIRYLTQGCLYRL-------DNTQAEL-- 410

peLRledpeyreyletilreaerllrLindlLdl<-*
+ +l++++++++r + i +l+++
AE014299_1 411 ----------ATALNKVISQVDRAQTTIHRLRTF 434

AE014299_4305: domain 1 of 1, from 208 to 272: score 29.9, E = 4.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + + n++H+LRTPL+ Ir +e L +++ +e se
AE014299_4 208 AVRGVTDNIAHDLRTPLSHIRIGIEELATKS------PDEISEGC-- 246

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e++++l+ + +L l+rie+g
AE014299_4 247 --------------AILTEELDHCLATFDAMLSLTRIEEG 272


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-15 21 0|==
-14 69 0|=====
-13 138 3|*=========
-12 301 105|======*==============
-11 494 548|================================= *
-10 754 1018|=================================================== *
-9 832 1051|======================================================== *
-8 709 787|================================================ *
-7 550 496|=================================*===
-6 295 285|==================*=
-5 192 156|==========*==
-4 114 83|=====*==
-3 57 44|==*=
-2 24 23|=*
-1 25 12|*=
0 10 6|*
1 2 3|*
2 2 1|*
3 1 0|=
4 1 0|=
> 5 39 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 532.0015
P(chi-square) = 0

Total sequences searched: 4630

Whole sequence top hits:
tophits_s report:
Total hits: 24
Satisfying E cutoff: 24
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 24
Satisfying E cutoff: 24
Total memory: 30K


Acknowledgements:

This research is funded by:

Developed by: