Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

1 accessions found for Pseudomonas putida KT2440  

Data for AE015451  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HWE_HK.hmm [HWE_HK]
Sequence database: AE015451.Gprot.fsa
per-sequence score cutoff: >= 60.0 [TC1]
per-domain score cutoff: >= 60.0 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HWE_HK
Accession: PF07536.4
Description: HWE histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE015451_3334 CDS_3805382-3807925 115.5 4.7e-39 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE015451_3334 1/1 520 600 .. 1 85 [] 115.5 4.7e-39

Alignments of top-scoring domains:
AE015451_3334: domain 1 of 1, from 520 to 600: score 115.5, E = 4.7e-39
*->ELnHRVKNtLAvVQSiarQTlRnaasldefveaFsgRLqALsraHdL
ELnHRVKN+L+++ +++++ +++l+++v+++ gR+qALs aHd+
AE015451_3 520 ELNHRVKNILSLIGALVAHPTPESQTLQDYVATLKGRIQALSLAHDQ 566

VpLtrseWagAdLreLleaeLaPyggedaeRitlsGPd<-*
++r + +g++L++LleaeL+Py+++ a+ i+l+GP+
AE015451_3 567 --VVRGD-GGGRLAKLLEAELSPYRTA-ADVIELQGPN 600


Histogram of all scores:
score obs exp (one = represents 17 sequences)
----- --- ---
-15 2 0|=
-14 16 0|=
-13 80 0|=====
-12 413 0|=========================
-11 543 43|==*=============================
-10 852 553|================================*==================
-9 904 1369|====================================================== *
-8 980 1421|==========================================================*
-7 626 954|===================================== *
-6 383 521|======================= *
-5 242 258|===============*
-4 140 122|=======*=
-3 85 56|===*=
-2 44 26|=*=
-1 20 11|*=
0 8 5|*
1 3 2|*
2 4 1|*
3 0 0|
4 1 0|=
> 5 4 -|=


% Statistical details of theoretical EVD fit:
mu = -7.9989
lambda = 0.7843
chi-sq statistic = 6344.3203
P(chi-square) = 0

Total sequences searched: 5350

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: