Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
41 projects found  

1 accessions found for Porphyromonas gingivalis W83  

Data for AE015924  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE015924.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE015924_1538 CDS_1890153-1893038 61.1 2.6e-17 1
AE015924_0631 CDS_773069-771786 48.4 1.1e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE015924_1538 1/1 426 493 .. 1 87 [] 61.1 2.6e-17
AE015924_0631 1/1 216 282 .. 1 87 [] 48.4 1.1e-13

Alignments of top-scoring domains:
AE015924_1538: domain 1 of 1, from 426 to 493: score 61.1, E = 2.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s f+ ++ HE+RTP+t+I+g+ e + +++l + +r
AE015924_1 426 LRSGFFTGITHEFRTPITVIQGLNEKMSS--------SPDLQASDR- 463

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ ++i+r++ ++l+L+n+lLd+ +i++g
AE015924_1 464 ----------TELHKIIDRQSSHMLNLVNQLLDICKIRSG 493

AE015924_0631: domain 1 of 1, from 216 to 282: score 48.4, E = 1.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ef++++sHEL TPL+ r +e+Ll d+ l+e+q
AE015924_0 216 QQKEFISHASHELQTPLAISRNKLEMLLQ--------DPSLNEQQ-- 252

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + +++++++++ +L lL +s+ie+
AE015924_0 253 ----------LEQIYKAIQSINHIVQLNKTLLLYSKIENH 282


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 2 0|=
-14 14 0|==
-13 31 1|*====
-12 101 43|======*========
-11 205 226|============================== *
-10 324 419|=============================================== *
-9 370 433|===================================================== *
-8 304 324|============================================ *
-7 211 204|=============================*=
-6 144 117|================*====
-5 93 64|=========*====
-4 44 34|====*==
-3 25 18|==*=
-2 15 9|=*=
-1 12 5|*=
0 4 2|*
1 2 1|*
2 2 0|=
3 0 0|
4 1 0|=
5 0 0|
> 6 5 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 146.3913
P(chi-square) = 8.128e-26

Total sequences searched: 1909

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: