Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
25 projects found  

2 accessions found for Chlamydophila caviae GPIC  

Data for AE015925  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE015925.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE015925_0156 CDS_167679-166621 70.5 3.1e-20 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE015925_0156 1/1 150 215 .. 1 87 [] 70.5 3.1e-20

Alignments of top-scoring domains:
AE015925_0156: domain 1 of 1, from 150 to 215: score 70.5, E = 3.1e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+l+HE+R+PL++I g+a+lL+e els++ +
AE015925_0 150 ELGKMTATLAHEIRNPLSGIAGFASLLKE----------ELSSPRH- 185

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l++i++ +++l++L++ +L++++ +
AE015925_0 186 ----------QRMLSSIIDGTRSLNSLVSSMLEYTKSQPL 215


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-14 6 0|==
-13 16 0|====
-12 51 22|=====*=======
-11 96 118|======================== *
-10 180 219|============================================= *
-9 199 226|================================================== *
-8 152 169|====================================== *
-7 122 106|==========================*====
-6 79 61|===============*====
-5 49 33|========*====
-4 18 18|====*
-3 10 9|==*
-2 11 5|=*=
-1 3 2|*
0 3 1|*
1 1 0|=
> 2 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 72.4984
P(chi-square) = 1.457e-11

Total sequences searched: 998

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: