Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

2 accessions found for Vibrio vulnificus CMCP6  

Data for AE016795  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: AE016795.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE016795_2075 CDS_2252545-2253900 68.3 5.7e-20 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE016795_2075 1/1 250 315 .. 1 70 [] 68.3 5.7e-20

Alignments of top-scoring domains:
AE016795_2075: domain 1 of 1, from 250 to 315: score 68.3, E = 5.7e-20
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
E +++ARELHD++ Q L + k +lel+++ + +++ ++ +ld
AE016795_2 250 EKKHLARELHDGINQLLVSSKCHLELLAHKV--QDP--SLKVHLDKS 292

relarealaevRrllgdLRpaal<-*
++ + +a++evR++ ++LRp+al
AE016795_2 293 QQSLTTAINEVRHISHQLRPSAL 315


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-14 26 0|===
-13 81 0|========
-12 131 33|==*=========
-11 215 272|==================== *
-10 543 632|================================================== *
-9 594 717|====================================================== *
-8 454 553|========================================== *
-7 326 347|============================== *
-6 213 196|=================*==
-5 176 105|=========*======
-4 87 55|====*===
-3 52 28|==*==
-2 34 14|=*==
-1 15 7|*=
0 6 3|*
1 7 1|*
2 4 0|=
3 3 0|=
4 1 0|=
5 1 0|=
6 1 0|=
7 1 0|=
> 8 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 473.8880
P(chi-square) = 0

Total sequences searched: 2973

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: