Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

2 accessions found for Vibrio vulnificus CMCP6  

Data for AE016796  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: AE016796.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE016796_0674 CDS_774322-772655 73.7 7.5e-22 1
AE016796_0482 CDS_564890-566389 52.2 1.7e-15 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE016796_0674 1/1 349 421 .. 1 70 [] 73.7 7.5e-22
AE016796_0482 1/1 303 368 .. 1 70 [] 52.2 1.7e-15

Alignments of top-scoring domains:
AE016796_0674: domain 1 of 1, from 349 to 421: score 73.7, E = 7.5e-22
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe.....eare
ERa IARELHDs++QsLs +k+q++l++r + +k +++++ + +
AE016796_0 349 ERATIARELHDSLAQSLSYLKIQVSLLKRSV--AKLNDepqlaRTNQ 393

aldeirelarealaevRrllgdLRpaal<-*
++e+ + ++ a++++R+ll+++R ++
AE016796_0 394 VIAELDTGLSSAYTQLRELLTTFRLTIK 421

AE016796_0482: domain 1 of 1, from 303 to 368: score 52.2, E = 1.7e-15
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
R+ ARELHD++gQ+++ai+ q++ ++r+ + + + +d+i
AE016796_0 303 VRRDVARELHDEIGQNITAIRTQASIIKRID--NLE--MNIRCADTI 345

relarealaevRrllgdLRpaal<-*
++l+ ++ + rll+ LRp l
AE016796_0 346 EQLSLNVYDTTKRLLSKLRPKML 368


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-14 4 0|=
-13 32 0|=====
-12 61 17|==*======
-11 104 143|=============== *
-10 293 332|========================================== *
-9 355 377|=================================================== *
-8 230 291|================================= *
-7 175 183|========================= *
-6 108 103|==============*=
-5 87 55|=======*=====
-4 40 29|====*=
-3 25 14|=*==
-2 19 7|*==
-1 9 3|*=
0 8 1|*=
1 1 1|*
2 5 0|=
3 2 0|=
4 0 0|
5 1 0|=
6 2 0|=
> 7 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 184.4445
P(chi-square) = 2.796e-34

Total sequences searched: 1565

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: