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Firmicutes Fusobacteria Gammaproteobacteria
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Thermotogae
Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Leifsonia xyli subsp. xyli str. CTCB07  

Data for AE016822  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE016822.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE016822_0224 CDS_311464-313062 84.0 9.3e-24 1
AE016822_0401 CDS_538090-539748 71.3 3.6e-20 1
AE016822_1434 CDS_1863406-1865121 69.9 9.2e-20 1
AE016822_1462 CDS_1892225-1891074 64.9 2.3e-18 1
AE016822_0190 CDS_260179-258746 59.4 8.7e-17 1
AE016822_1500 CDS_1939680-1938607 36.6 2.5e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE016822_0224 1/1 278 345 .. 1 87 [] 84.0 9.3e-24
AE016822_0401 1/1 287 354 .. 1 87 [] 71.3 3.6e-20
AE016822_1434 1/1 261 328 .. 1 87 [] 69.9 9.2e-20
AE016822_1462 1/1 150 216 .. 1 87 [] 64.9 2.3e-18
AE016822_0190 1/1 234 300 .. 1 87 [] 59.4 8.7e-17
AE016822_1500 1/1 159 225 .. 1 87 [] 36.6 2.5e-10

Alignments of top-scoring domains:
AE016822_0224: domain 1 of 1, from 278 to 345: score 84.0, E = 9.3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f+a++sHELRTPL++Irgyael ++ + +el+ +
AE016822_0 278 KVRQFVADASHELRTPLASIRGYAELTRR-------SPHELPRDV-- 315

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l +i++ea r+ +L++dlL l+r+++g
AE016822_0 316 ----------THSLGRIESEATRMTSLVEDLLLLARLDEG 345

AE016822_0401: domain 1 of 1, from 287 to 354: score 71.3, E = 3.6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt+Ir++ ++L + ++++ ++ +
AE016822_0 287 LQQRFVSDVSHELRTPLTTIRLAGDVLYD-------QRDTFPPAT-- 324

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e ++ ++er +rL++dlL++sr +ag
AE016822_0 325 ----------ERTAELLHTQVERFDRLLSDLLEISRYDAG 354

AE016822_1434: domain 1 of 1, from 261 to 328: score 69.9, E = 9.2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sHELRTPL ++rgyael ++ ++l ++
AE016822_1 261 QMRRFVGDASHELRTPLVSLRGYAELYRM---------GALQTPD-- 296

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ ++i++ea r+ L++dlL+l+r+++
AE016822_1 297 --------DVAQAMDRIEKEAIRMGILVEDLLELARLDET 328

AE016822_1462: domain 1 of 1, from 150 to 216: score 64.9, E = 2.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP+ a+ ++ae+L e + ++ q+
AE016822_1 150 VRRDFVANISHELKTPIGAVGLLAEALDE---------ASDDPGQV- 186

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ ++ +ea rl r+ +d+ +lsr++
AE016822_1 187 ----------RRFALRLSEEASRLARITQDIIELSRLQVA 216

AE016822_0190: domain 1 of 1, from 234 to 300: score 59.4, E = 8.7e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++++++sHELRTPL+++rg +el++ + +++ +
AE016822_0 234 RERQMVSDASHELRTPLAVLRGRLELAEL---------NAGDPDAL- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + + rl +L n+lL+lsrieag
AE016822_0 271 ----------LADIRSSHATTIRLGQLANNLLELSRIEAG 300

AE016822_1500: domain 1 of 1, from 159 to 225: score 36.6, E = 2.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++fl n+s ELRTPL++ r+++e+ l+ + l +e
AE016822_1 159 RQERFLGNASYELRTPLATGRAALEAPLT--------QGRLAPEV-- 195

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++r+ r+++ ++ lL +r ++
AE016822_1 196 ----------EPSVRRAIRSYLRMEEAVEGLLLVARVGEL 225


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 1 0|=
-14 9 0|==
-13 37 1|*=====
-12 96 46|======*=======
-11 199 240|============================= *
-10 344 446|================================================== *
-9 388 461|======================================================== *
-8 343 345|=================================================*
-7 253 217|==============================*======
-6 165 125|=================*======
-5 71 68|=========*=
-4 50 36|=====*==
-3 17 19|==*
-2 33 10|=*===
-1 8 5|*=
0 3 2|*
1 3 1|*
2 0 0|
3 1 0|=
4 0 0|
5 1 0|=
> 6 8 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 171.3698
P(chi-square) = 6.164e-31

Total sequences searched: 2030

Whole sequence top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: