Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Leifsonia xyli subsp. xyli str. CTCB07  

Data for AE016822  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: AE016822.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE016822_1542 CDS_1991187-1989694 102.9 2.2e-29 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE016822_1542 1/1 302 369 .. 1 74 [. 102.9 2.2e-29

Alignments of top-scoring domains:
AE016822_1542: domain 1 of 1, from 302 to 369: score 102.9, E = 2.2e-29
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ+++SLLr+Qar++ +ee+ +eaL + +RV++
AE016822_1 302 EIHHRVKNNLQTVASLLRIQARRTHSEEA-----REALSQAMRRVAA 343

mAliHEeLYksedldtvdfseYlekLt<-*
+A +H+ L+++ d vdf++++++++
AE016822_1 344 IAVVHDTLSTGLD-QIVDFDDVFDRVL 369


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-15 6 0|=
-14 26 0|===
-13 52 12|=*===
-12 172 133|============*===
-11 640 371|=================================*=========================
-10 423 480|======================================= *
-9 281 405|========================== *
-8 189 272|================== *
-7 83 161|======== *
-6 99 90|========*
-5 28 48|=== *
-4 14 25|==*
-3 9 13|=*
-2 3 7|*
-1 3 3|*
> 0 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 452.5313
P(chi-square) = 0

Total sequences searched: 2030

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: