Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
19 projects found  

2 accessions found for Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130  

Data for AE016823  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: AE016823.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE016823_2999 CDS_3773916-3774977 45.1 4.5e-13 1
AE016823_2725 CDS_3412920-3414755 40.8 8.1e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE016823_2999 1/1 149 212 .. 1 70 [] 45.1 4.5e-13
AE016823_2725 1/1 423 482 .. 1 70 [] 40.8 8.1e-12

Alignments of top-scoring domains:
AE016823_2999: domain 1 of 1, from 149 to 212: score 45.1, E = 4.5e-13
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER R++ ELHD+vgQ++ a+kl ++ ++p +++d+
AE016823_2 149 ERIRLSGELHDGVGQTILAAKLNFQAY------NRNPKVYGAQFDTG 189

relarealaevRrllgdLRpaal<-*
l+++a +e+R++ ++L+p++l
AE016823_2 190 LLLIDKASQELRDIYTNLHPSTL 212

AE016823_2725: domain 1 of 1, from 423 to 482: score 40.8, E = 8.1e-12
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RIA ++HDs+g L+ai le + + +l+ +
AE016823_2 423 ERERIASDIHDSIGSELTAILFELESKD----------KNDPTLKKL 459

relarealaevRrllgdLRpaal<-*
++ +++ ++ vR+++ +++++
AE016823_2 460 KTEVSHLISNVRDIVFLMHHQGN 482


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-14 43 0|====
-13 173 0|==============
-12 214 37|==*==============
-11 292 311|=======================*
-10 704 721|=======================================================*
-9 743 819|==========================================================*
-8 458 631|==================================== *
-7 312 397|======================== *
-6 184 224|=============== *
-5 135 120|=========*=
-4 69 62|====*=
-3 31 32|==*
-2 19 16|=*
-1 4 8|*
0 7 4|*
1 2 2|*
2 0 1|*
> 3 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 902.8325
P(chi-square) = 0

Total sequences searched: 3394

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: