Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
19 projects found  

2 accessions found for Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130  

Data for AE016824  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE016824.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE016824_0179 CDS_232351-234876 87.5 1.2e-25 1
AE016824_0235 CDS_312189-309874 68.0 4e-20 1
AE016824_0010 CDS_11116-12033 40.3 2.8e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE016824_0179 1/1 470 535 .. 1 87 [] 87.5 1.2e-25
AE016824_0235 1/1 542 610 .. 1 87 [] 68.0 4e-20
AE016824_0010 1/1 95 160 .. 1 87 [] 40.3 2.8e-12

Alignments of top-scoring domains:
AE016824_0179: domain 1 of 1, from 470 to 535: score 87.5, E = 1.2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+fla++sHE+RTPL++I+g++e + t+l+e q
AE016824_0 470 VKSQFLASMSHEIRTPLNGIIGLIEQFKS---------TPLDENQ-- 505

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + i++++e ll++ind+Ld+s++e+
AE016824_0 506 ----------QYIRNLIQKSGENLLKIINDILDFSKLEED 535

AE016824_0235: domain 1 of 1, from 542 to 610: score 68.0, E = 4e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak ef++n+sHELR P+t I+gy elL++e + t ls +q
AE016824_0 542 AKHEFISNISHELRSPMTNIQGYFELLRTEIN------TSLSKDQ-- 580

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l++i++ ++rl++Li++lL ++ + +
AE016824_0 581 ----------SGMLDVIEKNIKRLNHLIENLLKFEEVRGE 610

AE016824_0010: domain 1 of 1, from 95 to 160: score 40.3, E = 2.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f++++ HE++TPL+++r+ ae L+e el+ +
AE016824_0 95 MIHDFFSTVTHEMKTPLASLRLQAESLQE----------ELPNHHE- 130

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++l+++ r++++ n+ + l+ +
AE016824_0 131 ----------NKLIHRLLKDSVRIESQMNRAMYLASLTRS 160


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-14 1 0|=
-13 1 0|=
-12 12 6|=====*======
-11 27 31|=========================== *
-10 44 58|============================================ *
-9 55 59|======================================================= *
-8 55 44|===========================================*===========
-7 22 28|====================== *
-6 22 16|===============*======
-5 11 8|=======*===
-4 5 4|===*=
-3 3 2|=*=
> -2 6 -|======


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 16.4670
P(chi-square) = 0.02118

Total sequences searched: 264

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: