Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

1 accessions found for Mannheimia succiniciproducens MBEL55E  

Data for AE016827  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE016827.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE016827_1730 CDS_1716880-1715036 77.9 5.8e-22 1
AE016827_1914 CDS_1892931-1894322 58.2 2.2e-16 1
AE016827_1244 CDS_1245278-1244076 56.3 7.5e-16 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE016827_1730 1/1 114 179 .. 1 87 [] 77.9 5.8e-22
AE016827_1914 1/1 243 305 .. 1 87 [] 58.2 2.2e-16
AE016827_1244 1/1 181 247 .. 1 87 [] 56.3 7.5e-16

Alignments of top-scoring domains:
AE016827_1730: domain 1 of 1, from 114 to 179: score 77.9, E = 5.8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ ++a++sHELRTPL++I g++ +Ll+ ++l+eeq
AE016827_1 114 DKTTLMATISHELRTPLNGIVGLSRILLD---------SKLTEEQ-- 149

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yl+ti +a +l ++ nd+ dl++++
AE016827_1 150 ----------YNYLKTINVSAVSLGHIFNDIIDLEKLDGS 179

AE016827_1914: domain 1 of 1, from 243 to 305: score 58.2, E = 2.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l ++sHELRTPLt +++++ l+++ + +
AE016827_1 243 TRQALLYSISHELRTPLTRLQLAVALIRR---------RQGESRE-- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l +i+ eaerl+++indlL+lsr +
AE016827_1 279 -------------LTRIETEAERLDQMINDLLQLSRNQLK 305

AE016827_1244: domain 1 of 1, from 181 to 247: score 56.3, E = 7.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HELR PL+a+r +e++++ t+ +e q
AE016827_1 181 RERRFTSDAAHELRSPLAALRIQTEVAQM--------LTDEPELQ-- 217

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+ + + ++r ++Li++lL lsr+++
AE016827_1 218 ----------TQALDNLTKGIDRASQLIEQLLILSRLDNL 247


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-16 1 0|=
-15 7 0|=
-14 41 0|======
-13 92 1|*===========
-12 154 54|======*=============
-11 257 282|================================= *
-10 382 524|================================================ *
-9 433 541|======================================================= *
-8 388 405|================================================= *
-7 263 255|===============================*=
-6 143 147|==================*
-5 104 80|=========*===
-4 56 43|=====*=
-3 27 22|==*=
-2 11 11|=*
-1 9 6|*=
0 3 3|*
1 5 1|*
2 4 0|=
> 3 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 258.0720
P(chi-square) = 0

Total sequences searched: 2384

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: