Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

3 accessions found for Pseudomonas syringae pv. tomato str. DC3000  

Data for AE016853  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE016853.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE016853_1655 CDS_1861192-1858439 102.4 1.5e-28 1
AE016853_4745 CDS_5514202-5516991 91.0 2.5e-25 1
AE016853_2172 CDS_2438801-2436876 89.8 5.7e-25 1
AE016853_2090 CDS_2303388-2301148 86.7 4.2e-24 1
AE016853_1746 CDS_1953529-1951178 84.4 1.9e-23 1
AE016853_5345 CDS_6237744-6239066 83.0 4.6e-23 1
AE016853_3983 CDS_4584274-4587759 82.3 7.7e-23 1
AE016853_2657 CDS_3008195-3011707 77.9 1.3e-21 1
AE016853_1864 CDS_2077622-2079859 72.2 5.5e-20 1
AE016853_1570 CDS_1760910-1762121 70.9 1.3e-19 1
AE016853_0808 CDS_892525-890930 70.0 2.3e-19 1
AE016853_2599 CDS_2946692-2943711 68.0 8.6e-19 1
AE016853_2205 CDS_2486379-2489042 67.7 1e-18 1
AE016853_4133 CDS_4764408-4763026 67.6 1.1e-18 1
AE016853_0323 CDS_364946-366733 67.1 1.6e-18 1
AE016853_3522 CDS_4063509-4064897 66.4 2.4e-18 1
AE016853_1273 CDS_1436754-1435390 66.2 2.8e-18 1
AE016853_4673 CDS_5438182-5436176 65.8 3.5e-18 1
AE016853_0340 CDS_387229-386144 65.2 5.1e-18 1
AE016853_1569 CDS_1759601-1760776 64.3 9.3e-18 1
AE016853_2084 CDS_2296562-2297482 63.1 2e-17 1
AE016853_1917 CDS_2141576-2142682 59.9 1.7e-16 1
AE016853_4271 CDS_4936665-4935376 59.1 2.8e-16 1
AE016853_1637 CDS_1844578-1845972 59.1 2.8e-16 1
AE016853_0366 CDS_419213-420604 58.5 4.2e-16 1
AE016853_0875 CDS_978514-980127 57.7 7e-16 1
AE016853_1447 CDS_1627718-1631359 57.5 7.9e-16 1
AE016853_4773 CDS_5545779-5546909 57.3 9.2e-16 1
AE016853_0873 CDS_977240-975585 56.5 1.5e-15 1
AE016853_3813 CDS_4413040-4416513 56.0 2.1e-15 1
AE016853_1767 CDS_1976434-1975082 55.2 3.5e-15 1
AE016853_1855 CDS_2071021-2069648 53.0 1.5e-14 1
AE016853_4192 CDS_4836767-4839148 51.9 3.1e-14 1
AE016853_0942 CDS_1051557-1048609 49.6 1.4e-13 1
AE016853_0317 CDS_359769-361091 48.3 3.2e-13 1
AE016853_2660 CDS_3013207-3014388 46.9 8.2e-13 1
AE016853_5268 CDS_6130322-6132130 44.8 3.2e-12 1
AE016853_3502 CDS_4044659-4042719 43.0 1e-11 1
AE016853_5416 CDS_6321503-6320436 42.3 1.7e-11 1
AE016853_2919 CDS_3353925-3354110 40.7 4.5e-11 1
AE016853_3609 CDS_4166962-4169445 40.3 5.8e-11 2
AE016853_2662 CDS_3016915-3014885 39.7 8.8e-11 1
AE016853_1832 CDS_2045420-2043345 38.8 1.6e-10 1
AE016853_2274 CDS_2566677-2565244 37.0 5.1e-10 1
AE016853_5438 CDS_6352913-6354199 36.5 7.1e-10 1
AE016853_0769 CDS_852716-851370 36.4 7.7e-10 2
AE016853_4078 CDS_4702835-4704766 34.8 2.1e-09 1
AE016853_4292 CDS_4958927-4960963 33.3 5.6e-09 1
AE016853_4451 CDS_5144826-5143567 33.0 6.9e-09 1
AE016853_1258 CDS_1420117-1421523 32.7 8.5e-09 1
AE016853_3042 CDS_3498673-3497402 32.6 9.3e-09 1
AE016853_1455 CDS_1641034-1638947 31.9 1.4e-08 1
AE016853_2589 CDS_2936602-2935352 31.8 1.5e-08 1
AE016853_4190 CDS_4833443-4835200 31.4 2e-08 1
AE016853_2182 CDS_2446629-2445595 30.7 3.2e-08 1
AE016853_4710 CDS_5475016-5472317 29.2 8.2e-08 2
AE016853_2833 CDS_3260020-3258416 28.4 1.4e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE016853_1655 1/1 284 349 .. 1 87 [] 102.4 1.5e-28
AE016853_4745 1/1 396 461 .. 1 87 [] 91.0 2.5e-25
AE016853_2172 1/1 262 327 .. 1 87 [] 89.8 5.7e-25
AE016853_2090 1/1 375 439 .. 1 87 [] 86.7 4.2e-24
AE016853_1746 1/1 291 356 .. 1 87 [] 84.4 1.9e-23
AE016853_5345 1/1 205 272 .. 1 87 [] 83.0 4.6e-23
AE016853_3983 1/1 719 785 .. 1 87 [] 82.3 7.7e-23
AE016853_2657 1/1 493 561 .. 1 87 [] 77.9 1.3e-21
AE016853_1864 1/1 520 591 .. 1 87 [] 72.2 5.5e-20
AE016853_1570 1/1 173 238 .. 1 87 [] 70.9 1.3e-19
AE016853_0808 1/1 309 375 .. 1 87 [] 70.0 2.3e-19
AE016853_2599 1/1 536 607 .. 1 87 [] 68.0 8.6e-19
AE016853_2205 1/1 653 721 .. 1 87 [] 67.7 1e-18
AE016853_4133 1/1 243 308 .. 1 87 [] 67.6 1.1e-18
AE016853_0323 1/1 375 443 .. 1 87 [] 67.1 1.6e-18
AE016853_3522 1/1 242 308 .. 1 87 [] 66.4 2.4e-18
AE016853_1273 1/1 236 302 .. 1 87 [] 66.2 2.8e-18
AE016853_4673 1/1 418 483 .. 1 87 [] 65.8 3.5e-18
AE016853_0340 1/1 132 197 .. 1 87 [] 65.2 5.1e-18
AE016853_1569 1/1 170 235 .. 1 87 [] 64.3 9.3e-18
AE016853_2084 1/1 80 146 .. 1 87 [] 63.1 2e-17
AE016853_1917 1/1 148 214 .. 1 87 [] 59.9 1.7e-16
AE016853_4271 1/1 211 277 .. 1 87 [] 59.1 2.8e-16
AE016853_1637 1/1 236 301 .. 1 87 [] 59.1 2.8e-16
AE016853_0366 1/1 242 308 .. 1 87 [] 58.5 4.2e-16
AE016853_0875 1/1 179 244 .. 1 87 [] 57.7 7e-16
AE016853_1447 1/1 716 783 .. 1 87 [] 57.5 7.9e-16
AE016853_4773 1/1 152 218 .. 1 87 [] 57.3 9.2e-16
AE016853_0873 1/1 182 247 .. 1 87 [] 56.5 1.5e-15
AE016853_3813 1/1 796 863 .. 1 87 [] 56.0 2.1e-15
AE016853_1767 1/1 230 294 .. 1 87 [] 55.2 3.5e-15
AE016853_1855 1/1 238 303 .. 1 87 [] 53.0 1.5e-14
AE016853_4192 1/1 421 487 .. 1 87 [] 51.9 3.1e-14
AE016853_0942 1/1 754 820 .. 1 87 [] 49.6 1.4e-13
AE016853_0317 1/1 225 283 .. 1 87 [] 48.3 3.2e-13
AE016853_2660 1/1 168 241 .. 1 87 [] 46.9 8.2e-13
AE016853_5268 1/1 368 436 .. 1 87 [] 44.8 3.2e-12
AE016853_3502 1/1 272 340 .. 1 87 [] 43.0 1e-11
AE016853_5416 1/1 129 199 .. 1 87 [] 42.3 1.7e-11
AE016853_2919 1/1 20 54 .. 1 42 [. 40.7 4.5e-11
AE016853_2662 1/1 305 373 .. 1 87 [] 39.7 8.8e-11
AE016853_3609 2/2 455 523 .. 1 87 [] 39.2 1.2e-10
AE016853_1832 1/1 311 379 .. 1 87 [] 38.8 1.6e-10
AE016853_2274 1/1 2 53 .. 16 87 .] 37.0 5.1e-10
AE016853_5438 1/1 211 277 .. 1 87 [] 36.5 7.1e-10
AE016853_0769 2/2 236 294 .. 1 87 [] 35.9 1e-09
AE016853_4078 1/1 409 477 .. 1 87 [] 34.8 2.1e-09
AE016853_4292 1/1 412 502 .. 1 87 [] 33.3 5.6e-09
AE016853_4451 1/1 203 268 .. 1 87 [] 33.0 6.9e-09
AE016853_1258 1/1 262 297 .. 1 60 [. 32.7 8.5e-09
AE016853_3042 1/1 192 260 .. 1 87 [] 32.6 9.3e-09
AE016853_1455 1/1 321 389 .. 1 87 [] 31.9 1.4e-08
AE016853_2589 1/1 200 265 .. 1 87 [] 31.8 1.5e-08
AE016853_4190 1/1 363 431 .. 1 87 [] 31.4 2e-08
AE016853_2182 1/1 140 192 .. 1 81 [. 30.7 3.2e-08
AE016853_4710 2/2 670 740 .. 1 87 [] 28.9 9.9e-08
AE016853_2833 1/1 154 224 .. 1 87 [] 28.4 1.4e-07

Alignments of top-scoring domains:
AE016853_1655: domain 1 of 1, from 284 to 349: score 102.4, E = 1.5e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHE+RTPL++I+g+++lL++ +el++ q
AE016853_1 284 IKSEFLANMSHEIRTPLNGILGFTHLLQK---------SELTPRQ-- 319

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl ti+++a+ ll++in++Ld+s+ieag
AE016853_1 320 ----------FDYLATIEKSADNLLSIINEILDFSKIEAG 349

AE016853_4745: domain 1 of 1, from 396 to 461: score 91.0, E = 2.5e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak efla +sHE+RTP+++++g++elLl t+ls +q
AE016853_4 396 AKAEFLAKISHEIRTPMNGVLGMTELLLG---------TPLSVKQ-- 431

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y++ti+++++ ll Lin++Ld++++e+g
AE016853_4 432 ----------RDYVQTIHSAGNELLTLINEILDITKLESG 461

AE016853_2172: domain 1 of 1, from 262 to 327: score 89.8, E = 5.7e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTP+++++g+++l+++ t +++eq
AE016853_2 262 AKSDFLAMMSHELRTPMNGVLGMLQLMET---------TRMTDEQ-- 297

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey + +++e+ll+ ind+Ld+srie
AE016853_2 298 ----------SEYATLATESTEHLLKVINDILDFSRIERD 327

AE016853_2090: domain 1 of 1, from 375 to 439: score 86.7, E = 4.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefl+ +sHELRTPL++I+g+a+lL + + ++ q
AE016853_2 375 AKSEFLSRMSHELRTPLNSILGFAQLLDM----------DSPASQ-- 409

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + ilr++++ll+Lin++Ld++rieag
AE016853_2 410 ----------RPQVGHILRAGQHLLKLINEVLDIARIEAG 439

AE016853_1746: domain 1 of 1, from 291 to 356: score 84.4, E = 1.9e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+s fla++sHE+RTPL++++g++ l l+ ++l++eq
AE016853_1 291 ARSAFLAHMSHEIRTPLNGLLGMLALSLD---------SPLGAEQ-- 326

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l +++++++ l +L+nd+Ld+s+ +ag
AE016853_1 327 ----------RQQLMIAHDSGKVLVELLNDILDMSKFDAG 356

AE016853_5345: domain 1 of 1, from 205 to 272: score 83.0, E = 4.6e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+an+sHELRTPLt+I gy+e+Ll+++ +e ++
AE016853_5 205 MRKDFVANVSHELRTPLTVIFGYLETLLDNV-------EEVNPRW-- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+ +++++ r++ L+ndlL l+++ea
AE016853_5 243 ----------VRALQQMHQQGGRMQTLLNDLLLLAKLEAT 272

AE016853_3983: domain 1 of 1, from 719 to 785: score 82.3, E = 7.7e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ + +lsHELRTPL++I+g++++L++ ++ +++++
AE016853_3 719 AKSRYITGLSHELRTPLNSILGFTQILQR---------DTTTPPHH- 755

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l ti r++ +ll+Lin lLd ++ieag
AE016853_3 756 ----------QDPLATIMRSSSHLLSLINGLLDVAKIEAG 785

AE016853_2657: domain 1 of 1, from 493 to 561: score 77.9, E = 1.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++ + +a+lL e +++l++eq
AE016853_2 493 YKSEFLANMSHELRTPLNSSLILAKLLAE------NPSENLTAEQ-- 531

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e+i+++++ ll+Lind+Ld+s+ eag
AE016853_2 532 ----------VKFAESIYSAGNDLLNLINDILDISKVEAG 561

AE016853_1864: domain 1 of 1, from 520 to 591: score 72.2, E = 5.5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a +sH+LR+P+t+I++++ ++++ + +d++ ++ +
AE016853_1 520 ARDELVAVVSHDLRNPMTVISMLCGMMQKSF----SSDGPHTSRRI- 561

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++t++++a r++ L++dlLd s+ieag
AE016853_1 562 ----------STAIDTMQQAASRMNVLLEDLLDTSKIEAG 591

AE016853_1570: domain 1 of 1, from 173 to 238: score 70.9, E = 1.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a l H+LR+PL aI + aelLl+ +l++++
AE016853_1 173 LRDQFIAVLGHDLRNPLFAINASAELLLR---------RPLDDKT-- 208

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + il +++r ++L++d+Ld++r + g
AE016853_1 209 ----------LQVAQHILTSGQRASQLVDDVLDFARGRMG 238

AE016853_0808: domain 1 of 1, from 309 to 375: score 70.0, E = 2.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+++HE+R+PL a++ +a+lL e +++ls+++
AE016853_0 309 ALGRLTAGIAHEIRNPLGAVSHAAQLLNE--------SEDLSAPD-- 345

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ ++i+++++r++r i+++L+lsr ++
AE016853_0 346 ----------RRLGQIIHDQSQRIDRVIENVLQLSRRREA 375

AE016853_2599: domain 1 of 1, from 536 to 607: score 68.0, E = 8.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++a +sH+LR+P++ I++ + ++++++ + + ++
AE016853_2 536 LRDELVAVVSHDLRNPMSIIIMQCGMMQRWA-------VDDTNFEN- 574

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++r++l ti++++ r+++L++dlLd ++ieag
AE016853_2 575 -------RNIRRALGTIEKATTRMNSLLEDLLDTAQIEAG 607

AE016853_2205: domain 1 of 1, from 653 to 721: score 67.7, E = 1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +la++sH+LRTPLt++rg ++ Ll+ +g++ + e+
AE016853_2 653 LRSALLASVSHDLRTPLTSMRGSIDSLLA------LGEAIALEDR-- 691

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+le ++eaerl+r i++lLd++r+++g
AE016853_2 692 ----------RELLEGTRDEAERLDRYIQNLLDMTRLGHG 721

AE016853_4133: domain 1 of 1, from 243 to 308: score 67.6, E = 1.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+a+++HELRTPL+a+++ +el l+ e++++q
AE016853_4 243 RQAQFIADAAHELRTPLAALKARVELGLR----------EQDPQQ-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+r le++ ++rl +L n+lL l+rie+g
AE016853_4 278 ---------WRSTLESAALGTDRLTHLANQLLSLARIENG 308

AE016853_0323: domain 1 of 1, from 375 to 443: score 67.1, E = 1.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+sef+ +sHELRTP+t++ ++ lL+e + + +e r
AE016853_0 375 VRSEFVLRASHELRTPVTGMHMAFGLLQE--------RLHFAPESRE 413

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+t+ +e +rl +LindlL +sr ++g
AE016853_0 414 ----------ADLLNTVTEEMQRLMQLINDLLNFSRYQNG 443

AE016853_3522: domain 1 of 1, from 242 to 308: score 66.4, E = 2.4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f a+l+HE+RTP+ +++g+++++l+ +++s ++
AE016853_3 242 RLMQFSADLAHEIRTPVGSLMGHCQVALR---------QDRSVDE-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ +l + l+e+er++rL++ +L l+r+++
AE016853_3 278 ---------YQALLASNLEELERISRLVESILFLARADEA 308

AE016853_1273: domain 1 of 1, from 236 to 302: score 66.2, E = 2.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f a+++HELR PLt ++g ++++l+ +s+e+
AE016853_1 236 RLESFNADVAHELRSPLTNLIGQTQVALT---------RGRSAEH-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y e l++ l+e+erl+++ind+L l+ +++g
AE016853_1 272 ---------YFEVLQSNLEELERLRSIINDMLFLASADQG 302

AE016853_4673: domain 1 of 1, from 418 to 483: score 65.8, E = 3.5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla+l HELRTP+++++g +e++++ ++++e
AE016853_4 418 LKDEFLATLTHELRTPMNGVIGSLEVMQT---------LDMDDEV-- 453

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y +t+ ++a+ + ++in +L+l+ ++ag
AE016853_4 454 ----------EMYQQTAASSARDMMSMINGILTLTELQAG 483

AE016853_0340: domain 1 of 1, from 132 to 197: score 65.2, E = 5.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l+HE+++PL +Irg+a+lL + el+ee +
AE016853_0 132 TTKMLVRGLAHEIKNPLGGIRGAAQLLAR----------ELPEESL- 167

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+++i++ea+rl++L++++L ++ +
AE016853_0 168 ----------KDYTNVIIEEADRLRNLVDRMLGSNKLPSL 197

AE016853_1569: domain 1 of 1, from 170 to 235: score 64.3, E = 9.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +sH+LR+PL+aI+++a lL++ t+l + q
AE016853_1 170 FAEQMIGIVSHDLRNPLAAIKMAAGLLER---------TKLESRQ-- 205

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l i+++++r +r+i dlLd++ ++ g
AE016853_1 206 ----------ERILGHIHHSTDRAERMIVDLLDFTHARVG 235

AE016853_2084: domain 1 of 1, from 80 to 146: score 63.1, E = 2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ fl l H+LRTPL+aI++ a++Ll+ ++l++
AE016853_2 80 SRNIFLGILGHDLRTPLSAILLGADVLLR--------TSDLGPRS-- 116

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++i+++++r ++++ dlLd++r + g
AE016853_2 117 ----------TKVASRIYSSVKRASQIVGDLLDFTRSQIG 146

AE016853_1917: domain 1 of 1, from 148 to 214: score 59.9, E = 1.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+l+H++RTPL+a + ya+ L e +el+ e++
AE016853_1 148 SLGRMVASLAHQIRTPLSAAMIYASHLTE---------QELPVETQ- 184

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++++ ++ l+++++d+L ++r e +
AE016853_1 185 ----------QRFAARLKDRLHELEHQVRDMLVFARGELP 214

AE016853_4271: domain 1 of 1, from 211 to 277: score 59.1, E = 2.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f++++sHELRTPL ++ +elLle+ ++l+
AE016853_4 211 RERMFTSDVSHELRTPLMVLASSCELLLEN--------PALDLRG-- 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +e+i r+ e +++L++ +L l+r + +
AE016853_4 248 ----------RRQVERIGRACEEMRDLVQTFLMLARTQRE 277

AE016853_1637: domain 1 of 1, from 236 to 301: score 59.1, E = 2.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e+++++sHELRTP++ +r+ +e+ + + ++e r
AE016853_1 236 IQRELVRAVSHELRTPVARLRFGLEMVSD----------ATTPEAR- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y + ++++++ l++L++++L+++r+e+g
AE016853_1 272 ----------LKYMRGMDSDIQDLDKLVDEMLTYARLEQG 301

AE016853_0366: domain 1 of 1, from 242 to 308: score 58.5, E = 4.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f +l+HELR P++ ++g a++ l ++++e+
AE016853_0 242 QLAQFSDDLAHELRSPMNNLMGKAQVTLS---------RPRPSEE-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+++le+ +e+er++r+i+++L l+ ++
AE016853_0 278 ---------YKQALESCTEELERMSRMISQMLFLASVSQP 308

AE016853_0875: domain 1 of 1, from 179 to 244: score 57.7, E = 7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla +sH+LR+P+++I +++ L+ ++l++ +
AE016853_0 179 EKERFLAQASHDLRQPIHSIGMFTACLRS---------SPLGDYE-- 214

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++++ i+r+++ ++L + +Ld+ +++g
AE016853_0 215 ----------RQLVDNIDRSLHNVSQLFRTILDIYTLDSG 244

AE016853_1447: domain 1 of 1, from 716 to 783: score 57.5, E = 7.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP+ aI+g++el e++ ++ee
AE016853_1 716 AKSVFLASMSHEIRTPMGAIIGLLELECEQA-------LRRGEEP-- 753

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++++r+a l +Li + Ldl+rieag
AE016853_1 754 ----------TQGLQVAHRSATELVALIGESLDLARIEAG 783

AE016853_4773: domain 1 of 1, from 152 to 218: score 57.3, E = 9.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ fla l H+LR PL a+++ +elL + +++e++
AE016853_4 152 SRDIFLAILGHDLRAPLQAVSMSTELLAR--------KIPADEKT-- 188

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y+++i+ +++++ ++++dlL++ r + g
AE016853_4 189 ----------EAYISRIKTSTRHMGSMVSDLLEFVRSRLG 218

AE016853_0873: domain 1 of 1, from 182 to 247: score 56.5, E = 1.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ la +sH+LR+P+++I++++ L++ + l++++
AE016853_0 182 AKSRVLAQASHDLRQPIHSISLFTACLRD---------ASLGADE-- 217

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++++ i+r++ ++L + lLd+ + +g
AE016853_0 218 ----------RRLVDNIDRALSAVEQLFRSLLDIYTLNQG 247

AE016853_3813: domain 1 of 1, from 796 to 863: score 56.0, E = 2.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+L +PL+a r+++ +L ++ ++ s+e
AE016853_3 796 SKTRFLAAVSHDLMQPLNAARLFSAALSHQQ-------DDISSEA-- 833

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ +++++++ ++Li+dlLd+sr+e+g
AE016853_3 834 ----------QQLVQHLDSSLRSAEDLISDLLDISRLENG 863

AE016853_1767: domain 1 of 1, from 230 to 294: score 55.2, E = 3.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l+++sHELR PL+ +r ++ l+++ + ++e
AE016853_1 230 SQRQLLRDVSHELRSPLARLRIALALAER----------AEPAER-- 264

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++ re +rl++Li+++L l+r++a
AE016853_1 265 ----------EKLWPRLGRECDRLEALISEILALARLDAD 294

AE016853_1855: domain 1 of 1, from 238 to 303: score 53.0, E = 1.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a+++HELRTPLt +r +a+ ++ + s+eqr
AE016853_1 238 RERRFIADAAHELRTPLTILRIHAQNARQ----------AESPEQR- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l+ + + ++r rL ++lL+++r+e
AE016853_1 274 ----------LEALDFLVHGVDRAARLASQLLTMARLEPR 303

AE016853_4192: domain 1 of 1, from 421 to 487: score 51.9, E = 3.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+Ir ++lL+ ++l e+ r
AE016853_4 421 AIGQLTGGVAHDFNNLLTVIRSCSDLLKS---------ANLEEPRR- 457

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y+e i + ++r rL +lL ++r +a
AE016853_4 458 ----------VKYVEAISSTVDRAARLTGQLLAFARRQAL 487

AE016853_0942: domain 1 of 1, from 754 to 820: score 49.6, E = 1.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++a+++HE+ +P+t+I +a+ L+e + + ++
AE016853_0 754 SIGRLAAGVAHEIGNPITGIACLAQNLRE---------EREEDGEL- 790

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ + il++++r +r+++ l+ ++ ++a
AE016853_0 791 ----------KEISSQILEQTKRVSRIVQSLMSFAHAGAH 820

AE016853_0317: domain 1 of 1, from 225 to 283: score 48.3, E = 3.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la++sH+LRTPLt +r+ +el+ +
AE016853_0 225 ERELMLAGVSHDLRTPLTRLRLSLELMND------------------ 253

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ e + r++e ++++++++L + r +
AE016853_0 254 ----------NEFSEGMVRDIEDMDAILDQFLAFIRDGRD 283

AE016853_2660: domain 1 of 1, from 168 to 241: score 46.9, E = 8.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++ +sHE RTPL+++++ ++l + l k +++ + e++
AE016853_2 168 MRDDFMSIVSHEVRTPLNGLILETQLRKLHLAK--DNESAFTMEKL- 211

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++++ +r++++l rLi+d+Ld sri++g
AE016853_2 212 ----------RAMVDRDERQIQSLIRLIEDMLDVSRIRTG 241

AE016853_5268: domain 1 of 1, from 368 to 436: score 44.8, E = 3.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ + a++sHEL++PL+aIr yae ++ ld + ++ee
AE016853_5 368 ALGTMSASISHELNQPLAAIRSYAENAEVLLD------HQRTEEA-- 406

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+ i + + r+ ++i l+ ++r +
AE016853_5 407 ----------RGNLKLISELTGRMASIIAHLRAFARRDRH 436

AE016853_3502: domain 1 of 1, from 272 to 340: score 43.0, E = 1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I g +elL+++l + + +e +
AE016853_3 272 AVGQLTGGIAHDFNNLLTGITGSLELLKTRL-----SQGRFTEID-- 311

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y+ ++++++r +L +lL +sr ++
AE016853_3 312 -----------RYVAAAQDASKRAASLTHRLLAFSRRQTL 340

AE016853_5416: domain 1 of 1, from 129 to 199: score 42.3, E = 1.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++a+++HE ++PL+aI +++++l ++ + e++
AE016853_5 129 QLGELAASIAHEVNQPLSAIVISGNACQRWLA-----AEPVNLEKA- 169

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++e+++ +a+r ++i +++ l++ +
AE016853_5 170 ----------RQAVERMIGDANRAGDIIVRVRALAKRSST 199

AE016853_2919: domain 1 of 1, from 20 to 54: score 40.7, E = 4.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtels<-*
+++ef+a++sHELRTPL+++rg ++++++++ +l+
AE016853_2 20 MRREFMADVSHELRTPLSVLRGELQAIEDGV-------RTLD 54

AE016853_2662: domain 1 of 1, from 305 to 373: score 39.7, E = 8.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I+g +el+++++ + e++
AE016853_2 305 AVGQLTGGIAHDFNNMLTGIIGSLELIRRRV-------SRGHTEDL- 343

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +a+r +L +lL +sr ++
AE016853_2 344 ----------NSLVDLGVTSANRAAALTHRLLAFSRRQSL 373

AE016853_3609: domain 2 of 2, from 455 to 523: score 39.2, E = 1.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ L++I+g++el+ ++ + + +s+ +
AE016853_3 455 AVGQLTGGLAHDFNNLLAGISGALELMGTRIE-----QGRWSDVD-- 494

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y+ t++ +a+r +L +lL +sr ++
AE016853_3 495 -----------KYIVTAQGAAKRAAALTHRLLAFSRRQTL 523

AE016853_1832: domain 1 of 1, from 311 to 379: score 38.8, E = 1.6e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L++I+g +el+ ++l + s+ +
AE016853_1 311 AVGQLTGGIAHDFNNLLAGISGSLELITKRLA-----QGRVSDVD-- 350

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y+++++ +++r +L +lL +sr ++
AE016853_1 351 -----------RYVSVAQGAVRRAASLTHRLLAFSRRQTL 379

AE016853_2274: domain 1 of 1, from 2 to 53: score 37.0, E = 5.1e-10
*->PLtaIrgyaelLleeldkvlagdtelseeqrlpeLRledpeyreyle
P+ a++g++el+l+ +++++e + r ++e
AE016853_2 2 PIIAMIGMLELALK--------RADQGELD------------RSAIE 28

tilreaerllrLindlLdlsrieag<-*
+++++a+ ll+Li d+Ld++rie+g
AE016853_2 29 VAYSSANDLLDLIGDILDIARIESG 53

AE016853_5438: domain 1 of 1, from 211 to 277: score 36.5, E = 7.1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f++++s ELR PL ++ ++e+Ll + l+
AE016853_5 211 REQLFTSDVSNELRSPLIVLASASETLLQ--------TASLDIRC-- 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + +i r+++ +l+L++ +L l+r e
AE016853_5 248 ----------QKQVTRIARATDTMLHLVDTFLLLARDEDR 277

AE016853_0769: domain 2 of 2, from 236 to 294: score 35.9, E = 1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++la++sH+L+TP+t +r+ elL +
AE016853_0 236 GRTRMLAAISHDLNTPITELRLQMELLDD------------------ 264

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l++++ l++++++ L + r +a
AE016853_0 265 ----------GPERDDMLDSLDELRAMVRETLNFVRGDAV 294

AE016853_4078: domain 1 of 1, from 409 to 477: score 34.8, E = 2.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +++ +++HEL++PL+a+r+++ ++l + +++
AE016853_4 409 AIGQMSTSIAHELNQPLAALRTLSGNTVRFL-------ERGALDTA- 447

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ti + ++r+ r+ l+ ++r +
AE016853_4 448 ----------SANLRTINDLVDRMGRITASLRAFARRGDD 477

AE016853_4292: domain 1 of 1, from 412 to 502: score 33.3, E = 5.6e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++a+++HE+++PL aI+ +++ ++++l + +++ eq+
AE016853_4 412 SVGGLAAGMAHEINNPLGAILHNVQNIRRRL----SPELPKNIEQA- 453

peLRl.............edpeyreyletilreaerllrLindlLdlsri
+ ++ + + + e + + ++l+ i++++ r ++++ +L +sr+
AE016853_4 454 ----EadgidlaqvnlylESRDVPKLLDGIQQAGARAAKIVSHMLNFSRL 499

eag<-*
+
AE016853_4 500 SSR 502

AE016853_4451: domain 1 of 1, from 203 to 268: score 33.0, E = 6.9e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +a+++HEL TPL++++ +++ ++ + s++ +
AE016853_4 203 AVATQAAGAAHELGTPLATMSVLLKEMRQ----------DHSDPAL- 238

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l++++++++++ + +++l + +
AE016853_4 239 ----------QEDLSVLQEQVKQCKQTLQQLVRAAEANRR 268

AE016853_1258: domain 1 of 1, from 262 to 297: score 32.7, E = 8.5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++++++sH+LRTP+t +r+ +e L++ e+q+
AE016853_1 262 ERGQLFSAISHDLRTPITRLRLRVEFLED-------------EQQQ- 294

peLRledpeyrey<-*
r++
AE016853_1 295 ----------RKF 297

AE016853_3042: domain 1 of 1, from 192 to 260: score 32.6, E = 9.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L++++g++++++ +++
AE016853_3 192 AIGQLTGGIAHDFNNMLSGVLGALDMIRL----------RIGAQR-- 226

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ +y++ + ++a+r +L ++lL+++r ++
AE016853_3 227 ------FGEVDRYVDAAVSSANRAAALTQRLLTFARRQSL 260

AE016853_1455: domain 1 of 1, from 321 to 389: score 31.9, E = 1.4e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ L ++ g+ elLl + e +
AE016853_1 321 AVGQLTGGLAHDFNNLLMGVTGNMELLLS---------RIRQERFT- 357

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +y++ +l+ ++r +L +lL +sr ++
AE016853_1 358 --------GLDRYINAALEGSRRAASLTHRLLAFSRRQTL 389

AE016853_2589: domain 1 of 1, from 200 to 265: score 31.8, E = 1.5e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + +l +sHE+RTP+++I+g++++L + ++l++
AE016853_2 200 RERALLDQASHEFRTPIAVISGALDVLAR---------QTLPACA-- 235

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++ ++ l ++ lL lsr
AE016853_2 236 ----------APPIQRMRATVDNLTEIMVALLYLSREPVA 265

AE016853_4190: domain 1 of 1, from 363 to 431: score 31.4, E = 2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++ a+l+HE+++PLta r+ + +L+ l ++ r
AE016853_4 363 ALGQMSAALAHEINQPLTAQRMQLATLRL-----------LLDQGRV 398

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ ++l +++++ r+ +L l +++r
AE016853_4 399 DEA-------CKALVPVDQQLTRMAALTGHLKTFARKSPS 431

AE016853_2182: domain 1 of 1, from 140 to 192: score 30.7, E = 3.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++la++sH+LRTPL+ +++ +e ++e
AE016853_2 140 QRGRMLAAVSHDLRTPLSRLKLRVEQIEE------------------ 168

peLRledpeyreyletilreaerllrLindlLdl<-*
++ + ++++ + ++++ L +
AE016853_2 169 ----------PRLHGQMTQDLNDMISMLDATLAY 192

AE016853_4710: domain 2 of 2, from 670 to 740: score 28.9, E = 9.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e+ +l+HE+++PL+++r+++ l++l ++++ + e +
AE016853_4 670 TLGEMSTGLAHEINQPLNVMRMAVVNVLKRL-----SRGDVDIEYL- 710

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l +i+ +++r r ++ ++ + r +
AE016853_4 711 ----------TEKLTRIDTQVQRAARVVDHMRVFGRRSEV 740

AE016853_2833: domain 1 of 1, from 154 to 224: score 28.4, E = 1.4e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ L ++ gy++l+ +a+ + + + +
AE016853_2 154 ALGQLTGGIAHDFNNLLQVMGGYIDLIGS-----AAEKPVIDVQRV- 194

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + +++++er + L +lL ++r +
AE016853_2 195 ----------QRSVYHAKSAVERASTLTKQLLAFARKQKL 224


Histogram of all scores:
score obs exp (one = represents 19 sequences)
----- --- ---
-15 3 0|=
-14 24 0|==
-13 73 4|*===
-12 230 125|======*======
-11 496 649|=========================== *
-10 805 1204|=========================================== *
-9 1113 1243|==========================================================*
-8 968 931|================================================*==
-7 667 586|==============================*=====
-6 438 337|=================*======
-5 286 185|=========*======
-4 129 99|=====*=
-3 70 52|==*=
-2 52 27|=*=
-1 26 14|*=
0 16 7|*
1 9 3|*
2 3 2|*
3 3 1|*
4 1 0|=
5 0 0|
> 6 64 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 422.9357
P(chi-square) = 0

Total sequences searched: 5476

Whole sequence top hits:
tophits_s report:
Total hits: 57
Satisfying E cutoff: 57
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 57
Satisfying E cutoff: 57
Total memory: 43K


Acknowledgements:

This research is funded by:

Developed by: