Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Mycobacterium avium subsp. paratuberculosis K-10  

Data for AE016958  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: AE016958.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE016958_3321 CDS_3692016-3690517 123.1 8.5e-35 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE016958_3321 1/1 298 380 .. 1 94 [] 123.1 8.5e-35

Alignments of top-scoring domains:
AE016958_3321: domain 1 of 1, from 298 to 380: score 123.1, E = 8.5e-35
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ++++LLrLQar+++++e +eaL Es++RV S
AE016958_3 298 EIHHRVKNNLQTVAALLRLQARRTTNPEG-----REALIESVRRVSS 339

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+Al+H+ L++s d ++v+++e++++++ + + ++v++ ++ +
AE016958_3 340 IALVHDALSMSVD-EQVNLDEVIDRILPIMNDVASVDRP---IR--I 380


Histogram of all scores:
score obs exp (one = represents 22 sequences)
----- --- ---
-15 4 0|=
-14 10 0|=
-13 47 27|=*=
-12 269 285|============*
-11 1243 795|====================================*====================
-10 1006 1029|==============================================*
-9 657 869|============================== *
-8 557 583|==========================*
-7 245 346|============ *
-6 170 192|========*
-5 54 103|=== *
-4 36 55|==*
-3 26 28|=*
-2 10 15|*
-1 12 7|*
0 1 4|*
1 1 2|*
> 2 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 387.8439
P(chi-square) = 0

Total sequences searched: 4350

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: