Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

5 accessions found for Yersinia pestis biovar Microtus str. 91001  

Data for AE017042  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: AE017042.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE017042_1652 CDS_1884136-1882331 71.7 7.5e-21 1
AE017042_3253 CDS_3779620-3778091 55.2 5.4e-16 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE017042_1652 1/1 400 467 .. 1 70 [] 71.7 7.5e-21
AE017042_3253 1/1 309 374 .. 1 70 [] 55.2 5.4e-16

Alignments of top-scoring domains:
AE017042_1652: domain 1 of 1, from 400 to 467: score 71.7, E = 7.5e-21
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER IARELHDs++QsLs +k+q++ +++++ ++ pe ++++
AE017042_1 400 ERSAIARELHDSIAQSLSCLKIQISCLQMQT--PDLPENSNLLIKQM 444

relarealaevRrllgdLRpaal<-*
r+ ++ a++++R+ll+++R
AE017042_1 445 RDELNIAYRQLRELLTTFRLKLN 467

AE017042_3253: domain 1 of 1, from 309 to 374: score 55.2, E = 5.4e-16
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
R+ ARELHD+vgQ+ ++i+ q++ ++rl+ + ++ + +++i
AE017042_3 309 TRHDVARELHDEVGQTVTVIRTQASIIKRLT--TQQ--PVLTSAEMI 351

relarealaevRrllgdLRpaal<-*
+++a + ++ v ++l L paal
AE017042_3 352 ETAALRVYDGVHDVLAKLWPAAL 374


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-14 28 0|==
-13 117 0|=========
-12 165 43|===*========
-11 329 356|======================== *
-10 572 828|========================================= *
-9 786 940|========================================================= *
-8 563 724|========================================= *
-7 462 455|================================*
-6 336 257|==================*=====
-5 239 138|=========*========
-4 118 72|=====*===
-3 69 37|==*==
-2 46 18|=*==
-1 29 9|*==
0 17 4|*=
1 13 2|*
2 1 1|*
3 0 0|
4 2 0|=
> 5 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 712.7919
P(chi-square) = 0

Total sequences searched: 3895

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: