Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
32 projects found  

1 accessions found for   

Data for AE017125  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE017125.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE017125_0140 CDS_136754-135696 42.9 3.8e-12 1
AE017125_1657 CDS_1584505-1585788 41.2 1.2e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE017125_0140 1/1 139 203 .. 1 87 [] 42.9 3.8e-12
AE017125_1657 1/1 213 269 .. 1 78 [. 41.2 1.2e-11

Alignments of top-scoring domains:
AE017125_0140: domain 1 of 1, from 139 to 203: score 42.9, E = 3.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ a+l+HE+R+P+ +I+++++ Ll+ ++++
AE017125_0 139 SMGQVSAHLAHEIRNPIGSISLLTSSLLK----------RCDAQL-- 173

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ i++++ r +rLin L +++ ++
AE017125_0 174 ----------KPLVFEIKKALWRVERLINATLLFTKGVNP 203

AE017125_1657: domain 1 of 1, from 213 to 269: score 41.2, E = 1.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ + HE++TPL+ I++ +e+L++ ++l++ q
AE017125_1 213 SLNNFIKDTTHEINTPLSIILMSIETLQT---------QNLTSAQ-- 248

peLRledpeyreyletilreaerllrLindl<-*
+ +e+i+ ++++l++L dl
AE017125_1 249 ----------MQKIERIKLASKSLSHLYKDL 269


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-15 3 0|=
-14 25 0|=====
-13 46 1|*=======
-12 121 42|======*==============
-11 233 222|====================================*==
-10 327 412|======================================================= *
-9 336 425|======================================================== *
-8 289 318|================================================= *
-7 201 200|=================================*
-6 129 115|===================*==
-5 69 63|==========*=
-4 41 33|=====*=
-3 21 17|==*=
-2 15 9|=*=
-1 9 4|*=
0 3 2|*
1 0 1|*
2 2 0|=
> 3 5 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 189.7523
P(chi-square) = 2.202e-35

Total sequences searched: 1875

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: