Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
39 projects found  

1 accessions found for Prochlorococcus marinus subsp. marinus str. CCMP1375  

Data for AE017126  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE017126.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE017126_1419 CDS_1322037-1324109 79.2 2e-22 1
AE017126_0301 CDS_292769-293887 32.1 4.3e-09 1
AE017126_1119 CDS_1048119-1049264 26.9 1.3e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE017126_1419 1/1 416 484 .. 1 87 [] 79.2 2e-22
AE017126_0301 1/1 132 198 .. 1 87 [] 32.1 4.3e-09
AE017126_1119 1/1 147 171 .. 1 25 [. 26.9 1.3e-07

Alignments of top-scoring domains:
AE017126_1419: domain 1 of 1, from 416 to 484: score 79.2, E = 2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++n+sHELRTPL I+ y+e+L + d++l+ +++
AE017126_1 416 IQRRFISNVSHELRTPLFNIKSYVETLHD-------LDDKLDHKEK- 454

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+le++ +e++rl rL+nd+Ldls+ie+
AE017126_1 455 ----------MEFLEVANSETDRLTRLVNDVLDLSKIETA 484

AE017126_0301: domain 1 of 1, from 132 to 198: score 32.1, E = 4.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ e + l H+LR+PL+a+r+ya+lLl++l ++ s++
AE017126_0 132 QQKEQIGILVHQLRNPLAALRTYAQLLLRKL-------GPDSSQI-- 169

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++e +l+e ++ ++ + l ++++ +
AE017126_0 170 -----------DLVEGLLSEQKQVDKYLLALDEIAQPTQS 198

AE017126_1119: domain 1 of 1, from 147 to 171: score 26.9, E = 1.3e-07
*->akseflanlsHELRTPLtaIrgyae<-*
+++++l++++HELRTPL+a +++++
AE017126_1 147 SQERLLRMVAHELRTPLSAAKLALQ 171


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-15 1 0|=
-14 19 0|====
-13 61 1|*==========
-12 132 43|=======*==============
-11 240 223|=====================================*==
-10 349 413|==========================================================*
-9 310 427|==================================================== *
-8 273 319|============================================== *
-7 197 201|=================================*
-6 110 116|===================*
-5 80 63|==========*===
-4 50 34|=====*===
-3 26 17|==*==
-2 10 9|=*
-1 9 4|*=
0 8 2|*=
1 1 1|*
2 1 0|=
> 3 5 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 250.3260
P(chi-square) = 0

Total sequences searched: 1882

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: