Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

1 accessions found for Haemophilus ducreyi 35000HP  

Data for AE017143  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE017143.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE017143_1248 CDS_1205164-1206558 49.3 5.4e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE017143_1248 1/1 243 305 .. 1 87 [] 49.3 5.4e-14

Alignments of top-scoring domains:
AE017143_1248: domain 1 of 1, from 243 to 305: score 49.3, E = 5.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l+++sHEL+TPL+ +++++ l+++ + ++ +
AE017143_1 243 YQQRLLSDISHELKTPLARLQLATALIRR---------RNGDSAE-- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l +i++++ l+ ++ dlL lsr + +
AE017143_1 279 -------------LTRIDNQIMKLDTMVHDLLSLSRQQIN 305


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-15 8 0|==
-14 13 0|===
-13 48 1|*=========
-12 127 39|=======*==================
-11 186 203|====================================== *
-10 280 377|======================================================== *
-9 286 389|==========================================================*
-8 282 291|========================================================= *
-7 211 183|====================================*======
-6 108 105|====================*=
-5 63 58|===========*=
-4 45 31|======*==
-3 22 16|===*=
-2 23 8|=*===
-1 5 4|*
0 2 2|*
1 3 1|*
2 0 0|
3 3 0|=
4 0 0|
> 5 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 287.5826
P(chi-square) = 0

Total sequences searched: 1717

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: