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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

1 accessions found for Rickettsia typhi str. Wilmington  

Data for AE017197  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE017197.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE017197_0213 CDS_285869-287365 86.4 7.9e-25 1
AE017197_0438 CDS_578846-581596 78.2 1.7e-22 1
AE017197_0399 CDS_525240-523930 61.4 9.5e-18 1
AE017197_0577 CDS_784827-783022 49.5 2.3e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE017197_0213 1/1 268 333 .. 1 87 [] 86.4 7.9e-25
AE017197_0438 1/1 694 762 .. 1 87 [] 78.2 1.7e-22
AE017197_0399 1/1 229 287 .. 1 87 [] 61.4 9.5e-18
AE017197_0577 1/1 373 443 .. 1 87 [] 49.5 2.3e-14

Alignments of top-scoring domains:
AE017197_0213: domain 1 of 1, from 268 to 333: score 86.4, E = 7.9e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+an+sHELRTPL+aI+g++e+L + +e+
AE017197_0 268 SNTKFFANISHELRTPLNAIIGFSEILMS---------ERDTEKS-- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y++ i++++++ll++ind+Ldls++ a
AE017197_0 304 ----------KNYIKDIHDAGKHLLSMINDILDLSKASAD 333

AE017197_0438: domain 1 of 1, from 694 to 762: score 78.2, E = 1.7e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k efl+n+ HE++TPLt+I+ + e+L +++ ++ +e+qr
AE017197_0 694 LKHEFLRNINHEINTPLTGIISLGETLWANY-------DKFNEDQR- 732

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++e+i +++ rl++Lin++Ld+s++ +
AE017197_0 733 ----------RNAVEIIAKSSIRLNSLINNILDFSKLSSL 762

AE017197_0399: domain 1 of 1, from 229 to 287: score 61.4, E = 9.5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la++sH+LRTPLt +++ +el++e
AE017197_0 229 KRTNMLAMISHDLRTPLTRMKLQLELMEE------------------ 257

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+++ ++++ ++++in Ld+++ e+
AE017197_0 258 ----------NEAIKGFKQDILTMQQMINSYLDFAKGEST 287

AE017197_0577: domain 1 of 1, from 373 to 443: score 49.5, E = 2.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a s+ + ++HE+++PLt I++++e Ll+++ ++e ++
AE017197_0 373 AWSDVAKKVAHEIKNPLTPILLASERLLKKF------SAEIKDKS-- 411

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++ yl+ i+r ++ + ++++++ ++r+ a+
AE017197_0 412 --------EFESYLKMIIRHTNDIKNIVSEFVLFARLPAP 443


Histogram of all scores:
score obs exp (one = represents 3 sequences)
----- --- ---
-14 2 0|=
-13 18 0|======
-12 51 19|======*==========
-11 103 99|================================*==
-10 168 184|======================================================== *
-9 137 190|============================================== *
-8 105 142|=================================== *
-7 97 89|=============================*===
-6 62 51|================*====
-5 47 28|=========*======
-4 19 15|====*==
-3 8 8|==*
-2 10 4|=*==
-1 3 2|*
0 0 1|*
1 1 0|=
2 0 0|
3 2 0|=
> 4 5 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 95.1896
P(chi-square) = 1.473e-16

Total sequences searched: 838

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: