Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
19 projects found  

1 accessions found for Treponema denticola ATCC 35405  

Data for AE017226  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE017226.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE017226_2483 CDS_2525874-2527904 83.4 1.8e-23 1
AE017226_0489 CDS_547608-548717 83.4 1.9e-23 1
AE017226_1956 CDS_1985834-1984587 47.6 2.5e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE017226_2483 1/1 143 208 .. 1 87 [] 83.4 1.8e-23
AE017226_0489 1/1 143 210 .. 1 87 [] 83.4 1.9e-23
AE017226_1956 1/1 175 246 .. 1 87 [] 47.6 2.5e-13

Alignments of top-scoring domains:
AE017226_2483: domain 1 of 1, from 143 to 208: score 83.4, E = 1.8e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s flan+sHE+RTP+ +I+g+ el+ e t+l+eeq
AE017226_2 143 MRSLFLANVSHEIRTPIQTIIGMMELINE---------TNLDEEQ-- 178

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey++ + +ae ll L+nd+Ld+s++e+g
AE017226_2 179 ----------SEYTRQVNFSAEVLLTLVNDVLDFSKLESG 208

AE017226_0489: domain 1 of 1, from 143 to 210: score 83.4, E = 1.9e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a++sHEL+TPL++I+g+a +L++ +++ +++ +
AE017226_0 143 RERQFTADVSHELKTPLAVILGHANMLRR--------WGKDDPDRL- 180

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++++rea++++++i++lL ++r e+g
AE017226_0 181 ----------EHSLSVLIREAHSMQSIIENLLRIARFENG 210

AE017226_1956: domain 1 of 1, from 175 to 246: score 47.6, E = 2.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +a+++HE+++PL+aI+ +++lL++++ t+++ ++
AE017226_1 175 SLTNVAAAVAHEIKNPLAAISIHLQLLKKNF-------TACNLSINQ 214

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ + +i++e+erl++++ d+L r
AE017226_1 215 KA--------QKHIGVIEEEIERLNKIVVDFLFAVRPLKF 246


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-15 6 0|=
-14 29 0|===
-13 97 2|*=========
-12 181 63|======*============
-11 328 328|================================*
-10 480 608|================================================ *
-9 544 628|======================================================= *
-8 418 470|========================================== *
-7 281 296|=============================*
-6 167 170|================*
-5 96 93|=========*
-4 63 50|====*==
-3 37 26|==*=
-2 16 13|=*
-1 9 7|*
0 8 3|*
1 0 1|*
2 1 1|*
3 0 0|
4 1 0|=
5 0 0|
6 1 0|=
> 7 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 272.7913
P(chi-square) = 0

Total sequences searched: 2767

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: