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Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Methylococcus capsulatus str. Bath  

Data for AE017282  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE017282.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE017282_1130 CDS_1266303-1262770 93.7 2.4e-26 1
AE017282_2951 CDS_3292496-3291180 84.0 1.4e-23 1
AE017282_2094 CDS_2391478-2388746 72.4 2.6e-20 1
AE017282_2346 CDS_2650924-2652405 66.0 1.7e-18 1
AE017282_1831 CDS_2088247-2086922 65.6 2.1e-18 1
AE017282_2207 CDS_2525693-2527093 63.7 7.7e-18 1
AE017282_2413 CDS_2719518-2718424 63.0 1.2e-17 1
AE017282_1614 CDS_1832173-1830620 62.7 1.4e-17 1
AE017282_2155 CDS_2474701-2473304 55.6 1.5e-15 1
AE017282_1664 CDS_1893470-1894870 48.7 1.4e-13 1
AE017282_2946 CDS_3285612-3287387 48.2 1.9e-13 1
AE017282_0733 CDS_815292-814117 35.4 7.8e-10 1
AE017282_2701 CDS_3038541-3040745 32.4 5.5e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE017282_1130 1/1 520 585 .. 1 87 [] 93.7 2.4e-26
AE017282_2951 1/1 202 270 .. 1 87 [] 84.0 1.4e-23
AE017282_2094 1/1 675 743 .. 1 87 [] 72.4 2.6e-20
AE017282_2346 1/1 270 335 .. 1 87 [] 66.0 1.7e-18
AE017282_1831 1/1 220 285 .. 1 87 [] 65.6 2.1e-18
AE017282_2207 1/1 243 309 .. 1 87 [] 63.7 7.7e-18
AE017282_2413 1/1 134 198 .. 1 87 [] 63.0 1.2e-17
AE017282_1614 1/1 271 339 .. 1 87 [] 62.7 1.4e-17
AE017282_2155 1/1 238 302 .. 1 87 [] 55.6 1.5e-15
AE017282_1664 1/1 238 303 .. 1 87 [] 48.7 1.4e-13
AE017282_2946 1/1 373 439 .. 1 87 [] 48.2 1.9e-13
AE017282_0733 1/1 187 245 .. 1 87 [] 35.4 7.8e-10
AE017282_2701 1/1 495 567 .. 1 87 [] 32.4 5.5e-09

Alignments of top-scoring domains:
AE017282_1130: domain 1 of 1, from 520 to 585: score 93.7, E = 2.4e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTP+++++g++elL++ t++s eq
AE017282_1 520 AKSAFLANMSHEIRTPMNGVLGMLELLKD---------TDMSREQ-- 555

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++et+ ++ae+ll++in +Ld+s++eag
AE017282_1 556 ----------WDLVETASNSAESLLEIINSILDFSKLEAG 585

AE017282_2951: domain 1 of 1, from 202 to 270: score 84.0, E = 1.4e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s+f+an+sHELRTPLt+++gy e+L e + ++l++
AE017282_2 202 VRSDFVANVSHELRTPLTVLKGYMETLNEAG-------QDLPPSA-- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr++++++ +++ r+++L+++lL l+r+e+g
AE017282_2 240 ---------YRKMVQRMVEQTGRMQSLVDNLLSLTRLESG 270

AE017282_2094: domain 1 of 1, from 675 to 743: score 72.4, E = 2.6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l+++sH+LRTPL++I g a++L e gd +l +e+r
AE017282_2 675 LRNSLLSSISHDLRTPLATIVGSASTLVE-------GDYALEPEDR- 713

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ + i++e++r+ +L+n++Ld+++ +ag
AE017282_2 714 ----------RELCRAIYDESRRMASLVNNILDMAWFDAG 743

AE017282_2346: domain 1 of 1, from 270 to 335: score 66.0, E = 1.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a+++HELR+PL++I++ ++ L++ + ++e+
AE017282_2 270 ALGELAAGIAHELRNPLAGIQTSCSNLKN---------EMGNPEH-- 305

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e le i++e++r+ rL+ndlL +
AE017282_2 306 ----------VERLELIIDELKRMGRLLNDLLAQGKHTPA 335

AE017282_1831: domain 1 of 1, from 220 to 285: score 65.6, E = 2.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++HELR PLta+++ ++++++ ++ + +q
AE017282_1 220 AQRRFTADAAHELRSPLTALSLQVQIAER---------ADDPQKQ-- 255

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+++++ ++r + +n++L+l+r + +
AE017282_1 256 ----------ALALQRLRQGIQRATHVLNQMLTLARFDPE 285

AE017282_2207: domain 1 of 1, from 243 to 309: score 63.7, E = 7.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a++sHELR PL+ +r+ +e+ l+ ++ +++e
AE017282_2 243 VQRRFTADASHELRSPLSRLRAELEITLR--------RPRRPDEY-- 279

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l++ l+e+erl +L++ lL+l+r++a+
AE017282_2 280 ----------ERTLHSCLEEVERLTQLVEALLELARLDAQ 309

AE017282_2413: domain 1 of 1, from 134 to 198: score 63.0, E = 1.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + +l++l+HE+++PL ++rg+a+lL++ el +e
AE017282_2 134 AARSLLRGLAHEIKNPLGGLRGAAQLLER----------ELQDEL-- 168

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey+++i++e++rl++L++++L ++ +
AE017282_2 169 ----------REYTQIIIEESDRLQSLLDRMLGPNKLPQK 198

AE017282_1614: domain 1 of 1, from 271 to 339: score 62.7, E = 1.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++f++++sHE +TPL++I + lL +e+ +el++eq
AE017282_1 271 AKQQFMRHVSHEVKTPLATIHEGTGLLADEV------VGELNPEQ-- 309

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++++ + ++rl+rLi l +s++ a
AE017282_1 310 ----------KEITQILVSNTQRLERLITALINFSQANAD 339

AE017282_2155: domain 1 of 1, from 238 to 302: score 55.6, E = 1.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++l+++sHELR PLt ++ ++ l+++++ + e +
AE017282_2 238 AQQRLLRDVSHELRSPLTRMSIALGLARRKG-------AGGAEGE-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+i++e+ rl+ Li ++L+ sr+ g
AE017282_2 276 -------------HERIEQEISRLDGLIGQILQWSRLNDG 302

AE017282_1664: domain 1 of 1, from 238 to 303: score 48.7, E = 1.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ n++H+LRTPL++++ ae +l+ ++++e++
AE017282_1 238 TQRRFIENAAHQLRTPLAGLKIQAERALR----------AQDPETM- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l i+++a+r +L +lL l+r ea
AE017282_1 274 ----------RPALIHIKNSADRVAHLSTQLLVLARSEAV 303

AE017282_2946: domain 1 of 1, from 373 to 439: score 48.2, E = 1.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +e++a ++HE RTPL + + a++L++ ++ ls+e
AE017282_2 373 MVGEMAAIMAHEVRTPLGILHTSAQMLQR--------EPLLSAEG-- 409

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+++ +l+e+ rl+rLi+ lL+ +r + +
AE017282_2 410 ----------LELTRFMLDESARLERLISTLLECARPRPP 439

AE017282_0733: domain 1 of 1, from 187 to 245: score 35.4, E = 7.8e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+fla++sH+LRTP+t + + +e +
AE017282_0 187 QRSQFLAAVSHDLRTPITRLNLRVEGVEP------------------ 215

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ e+++++++ ++ ++ Ld+ r +
AE017282_0 216 ----------PELREKLHEDLREMSIMLGSTLDYLRGHVE 245

AE017282_2701: domain 1 of 1, from 495 to 567: score 32.4, E = 5.5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a se ++ l+HE+++PLt I++ ae L +l + + +e+++e +
AE017282_2 495 AWSEVARRLAHEIKNPLTPIQLSAERLHHKL---ASRLDERDAEIL- 537

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ti +++e l +++n + +++r +
AE017282_2 538 ----------DRSTRTIVHQVEALKAMVNAFAEYARSSTI 567


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-14 10 0|=
-13 36 2|*===
-12 108 67|======*====
-11 289 350|============================= *
-10 461 650|=============================================== *
-9 533 672|====================================================== *
-8 532 503|==================================================*===
-7 357 317|===============================*====
-6 260 182|==================*=======
-5 150 100|=========*=====
-4 88 53|=====*===
-3 60 28|==*===
-2 25 14|=*=
-1 16 7|*=
0 11 4|*=
1 3 2|*
2 2 1|*
3 1 0|=
> 4 18 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 256.8274
P(chi-square) = 0

Total sequences searched: 2960

Whole sequence top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: