Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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Data for AE017282  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: AE017282.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE017282_0739 CDS_822990-821671 48.6 3.5e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE017282_0739 1/1 233 299 .. 1 70 [] 48.6 3.5e-14

Alignments of top-scoring domains:
AE017282_0739: domain 1 of 1, from 233 to 299: score 48.6, E = 3.5e-14
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe.earealde
ER+ +A+ELHD++gQsLsaik + +r+ ++ ++++ ++a+ +
AE017282_0 233 ERRYLAQELHDELGQSLSAIKAIAASLRK----PERDDrPNADAIGA 275

irelarealaevRrllgdLRpaal<-*
i+ ++++ a +R l ++LRp l
AE017282_0 276 IQSICDHLFAVLRTLMQRLRPLML 299


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-16 1 0|=
-15 0 0|
-14 7 0|=
-13 35 0|====
-12 68 33|===*===
-11 110 271|=========== *
-10 310 629|=============================== *
-9 535 714|====================================================== *
-8 458 550|============================================== *
-7 388 346|==================================*====
-6 333 196|===================*==============
-5 282 105|==========*==================
-4 147 54|=====*=========
-3 98 28|==*=======
-2 71 14|=*======
-1 50 7|*====
0 24 3|*==
1 15 1|*=
2 9 0|=
3 6 0|=
4 1 0|=
5 5 0|=
6 1 0|=
7 1 0|=
8 0 0|
9 0 0|
10 1 0|=
11 2 0|=
12 0 0|
> 13 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1550.7833
P(chi-square) = 0

Total sequences searched: 2960

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: