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Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Propionibacterium acnes KPA171202  

Data for AE017283  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE017283.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE017283_1321 CDS_1460306-1458558 76.0 2e-21 1
AE017283_0350 CDS_409631-408450 66.1 1.3e-18 1
AE017283_2055 CDS_2286813-2288243 64.5 3.6e-18 1
AE017283_0113 CDS_141989-144481 60.3 5.3e-17 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE017283_1321 1/1 336 401 .. 1 87 [] 76.0 2e-21
AE017283_0350 1/1 154 220 .. 1 87 [] 66.1 1.3e-18
AE017283_2055 1/1 250 320 .. 1 87 [] 64.5 3.6e-18
AE017283_0113 1/1 603 671 .. 1 87 [] 60.3 5.3e-17

Alignments of top-scoring domains:
AE017283_1321: domain 1 of 1, from 336 to 401: score 76.0, E = 2e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTP+t++r+++e+ ++ + ++ q
AE017283_1 336 LQQQFVSDVSHELRTPMTTMRMASEMVEA---------NPDDPVQ-- 371

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +e ++ + erl+ L+ dlL++sr +ag
AE017283_1 372 ----------VRSVELMRAQMERLELLLADLLEISRFDAG 401

AE017283_0350: domain 1 of 1, from 154 to 220: score 66.1, E = 1.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP+ a++ +ae+++ ++ ++e +
AE017283_0 154 TRRDFVANVSHELKTPIGAVSILAEAIEG---------AADDPEAI- 190

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + +++ e+ rl++L+ ++ dlsr++a
AE017283_0 191 ----------RHFSQRLTAESSRLSALVTQIIDLSRLQAD 220

AE017283_2055: domain 1 of 1, from 250 to 320: score 64.5, E = 3.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +++a++sHELRTPLt++r+++elL +++ +++ l+ee r
AE017283_2 250 RQKQLIADASHELRTPLTSMRTNVELLMADQ-----KSHMLPEEAR- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l+ + ++ ++Li dl +lsr +a+
AE017283_2 291 ----------GEILDDVAAQLGEFSSLIGDLVQLSREDAP 320

AE017283_0113: domain 1 of 1, from 603 to 671: score 60.3, E = 5.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l+++ H+LR PL+a ++++ L+ ++++ls+++r
AE017283_0 603 VRTALLSAVGHDLRRPLAAATAAVSGLRS-------EWSKLSDQDR- 641

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++let+++++ +l +L+ dlLd sr+++g
AE017283_0 642 ----------ADLLETADEALSQLANLVTDLLDVSRLQSG 671


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-15 1 0|=
-14 8 0|=
-13 42 1|*====
-12 112 52|=====*=======
-11 222 272|========================= *
-10 402 505|============================================= *
-9 491 521|======================================================= *
-8 392 390|===========================================*
-7 263 246|===========================*==
-6 158 141|===============*==
-5 90 77|========*=
-4 43 41|====*
-3 39 21|==*==
-2 12 11|=*
-1 10 6|*=
0 3 3|*
1 2 1|*
2 1 0|=
3 0 0|
> 4 6 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 120.4718
P(chi-square) = 1.457e-20

Total sequences searched: 2297

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: