Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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2 accessions found for   

Data for AE017285  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE017285.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE017285_2603 CDS_2734559-2737561 100.9 2.5e-28 1
AE017285_0448 CDS_513967-509426 98.9 8.9e-28 1
AE017285_2269 CDS_2372134-2369933 97.1 3e-27 1
AE017285_2666 CDS_2793696-2790679 94.1 2.1e-26 1
AE017285_1557 CDS_1644419-1647538 87.9 1.2e-24 1
AE017285_3031 CDS_3168343-3171210 87.7 1.4e-24 1
AE017285_3254 CDS_3444526-3447045 87.5 1.5e-24 1
AE017285_0013 CDS_16462-18270 83.3 2.4e-23 1
AE017285_0678 CDS_756032-754029 79.8 2.4e-22 1
AE017285_2400 CDS_2518580-2515473 78.5 5.5e-22 1
AE017285_0619 CDS_690729-688231 76.8 1.6e-21 1
AE017285_3044 CDS_3185165-3188836 76.8 1.7e-21 1
AE017285_2664 CDS_2788003-2789466 74.0 1.1e-20 1
AE017285_3048 CDS_3196564-3193322 72.0 3.9e-20 1
AE017285_0538 CDS_613847-611436 67.4 7.8e-19 1
AE017285_0941 CDS_1037557-1039989 63.9 7.5e-18 1
AE017285_1412 CDS_1491108-1492847 59.4 1.5e-16 1
AE017285_3137 CDS_3304918-3306579 58.1 3.4e-16 1
AE017285_2383 CDS_2499451-2498363 57.8 3.9e-16 1
AE017285_3206 CDS_3391229-3389703 56.7 8.3e-16 1
AE017285_3366 CDS_3557770-3555731 53.7 6.1e-15 1
AE017285_0109 CDS_141455-142687 53.5 6.8e-15 1
AE017285_2574 CDS_2712264-2710879 51.6 2.3e-14 1
AE017285_2117 CDS_2224406-2226877 47.6 3.1e-13 1
AE017285_2918 CDS_3034225-3036426 47.4 3.6e-13 1
AE017285_0579 CDS_647941-645923 46.4 6.8e-13 1
AE017285_0119 CDS_155072-153408 46.2 8.1e-13 1
AE017285_0269 CDS_310963-313233 42.9 6.8e-12 1
AE017285_0739 CDS_830471-832468 42.9 6.9e-12 1
AE017285_0139 CDS_173772-175484 42.9 6.9e-12 1
AE017285_1950 CDS_2030405-2033002 42.7 7.9e-12 1
AE017285_0677 CDS_754167-752095 41.7 1.5e-11 1
AE017285_3318 CDS_3510384-3508603 41.7 1.5e-11 1
AE017285_2533 CDS_2658134-2659672 39.4 6.8e-11 1
AE017285_3008 CDS_3138517-3141936 38.0 1.7e-10 1
AE017285_2948 CDS_3068730-3070463 37.1 3e-10 1
AE017285_0081 CDS_100289-98559 36.9 3.4e-10 1
AE017285_0733 CDS_825817-823577 36.3 4.9e-10 2
AE017285_0092 CDS_120436-117119 33.4 3.4e-09 2
AE017285_3047 CDS_3190672-3192966 33.3 3.6e-09 2
AE017285_2953 CDS_3072601-3073725 29.7 3.6e-08 1
AE017285_0799 CDS_888532-889797 28.6 7.6e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE017285_2603 1/1 610 675 .. 1 87 [] 100.9 2.5e-28
AE017285_0448 1/1 1129 1194 .. 1 87 [] 98.9 8.9e-28
AE017285_2269 1/1 352 417 .. 1 87 [] 97.1 3e-27
AE017285_2666 1/1 633 698 .. 1 87 [] 94.1 2.1e-26
AE017285_1557 1/1 658 723 .. 1 87 [] 87.9 1.2e-24
AE017285_3031 1/1 570 635 .. 1 87 [] 87.7 1.4e-24
AE017285_3254 1/1 436 501 .. 1 87 [] 87.5 1.5e-24
AE017285_0013 1/1 367 434 .. 1 87 [] 83.3 2.4e-23
AE017285_0678 1/1 141 206 .. 1 87 [] 79.8 2.4e-22
AE017285_2400 1/1 510 575 .. 1 87 [] 78.5 5.5e-22
AE017285_0619 1/1 249 315 .. 1 87 [] 76.8 1.6e-21
AE017285_3044 1/1 846 912 .. 1 87 [] 76.8 1.7e-21
AE017285_2664 1/1 259 327 .. 1 87 [] 74.0 1.1e-20
AE017285_3048 1/1 265 330 .. 1 87 [] 72.0 3.9e-20
AE017285_0538 1/1 580 645 .. 1 87 [] 67.4 7.8e-19
AE017285_0941 1/1 585 649 .. 1 87 [] 63.9 7.5e-18
AE017285_1412 1/1 350 416 .. 1 87 [] 59.4 1.5e-16
AE017285_3137 1/1 271 337 .. 1 87 [] 58.1 3.4e-16
AE017285_2383 1/1 113 188 .. 1 87 [] 57.8 3.9e-16
AE017285_3206 1/1 253 351 .. 1 87 [] 56.7 8.3e-16
AE017285_3366 1/1 426 492 .. 1 87 [] 53.7 6.1e-15
AE017285_0109 1/1 184 250 .. 1 87 [] 53.5 6.8e-15
AE017285_2574 1/1 242 308 .. 1 87 [] 51.6 2.3e-14
AE017285_2117 1/1 442 508 .. 1 87 [] 47.6 3.1e-13
AE017285_2918 1/1 515 584 .. 1 87 [] 47.4 3.6e-13
AE017285_0579 1/1 432 503 .. 1 87 [] 46.4 6.8e-13
AE017285_0119 1/1 271 337 .. 1 87 [] 46.2 8.1e-13
AE017285_0269 1/1 525 596 .. 1 87 [] 42.9 6.8e-12
AE017285_0739 1/1 430 496 .. 1 87 [] 42.9 6.9e-12
AE017285_0139 1/1 335 408 .. 1 87 [] 42.9 6.9e-12
AE017285_1950 1/1 615 705 .. 1 87 [] 42.7 7.9e-12
AE017285_0677 1/1 433 504 .. 1 87 [] 41.7 1.5e-11
AE017285_3318 1/1 356 422 .. 1 87 [] 41.7 1.5e-11
AE017285_2533 1/1 252 342 .. 1 87 [] 39.4 6.8e-11
AE017285_3008 1/1 768 834 .. 1 87 [] 38.0 1.7e-10
AE017285_2948 1/1 347 419 .. 1 87 [] 37.1 3e-10
AE017285_0081 1/1 301 391 .. 1 87 [] 36.9 3.4e-10
AE017285_2953 1/1 136 210 .. 1 87 [] 29.7 3.6e-08
AE017285_0799 1/1 150 216 .. 1 87 [] 28.6 7.6e-08

Alignments of top-scoring domains:
AE017285_2603: domain 1 of 1, from 610 to 675: score 100.9, E = 2.5e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+eflan+sHE+RTPL++I+g+ +lL t+l++eq
AE017285_2 610 AKTEFLANMSHEIRTPLNGIMGMMQLLVS---------TPLDDEQ-- 645

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++ +++++ rl++L++d+Ldlsrieag
AE017285_2 646 ----------KQYVSNAISSSGRLSQLLSDVLDLSRIEAG 675

AE017285_0448: domain 1 of 1, from 1129 to 1194: score 98.9, E = 8.9e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++ +g+++lL+ + ls+eq
AE017285_0 1129 TKSEFLANVSHELRTPLNGALGMLQLLEL---------SSLSPEQ-- 1164

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y+ t++r+++ l rL++d+Ldlsrieag
AE017285_0 1165 ----------RQYVTTAIRSGQNLVRLLSDILDLSRIEAG 1194

AE017285_2269: domain 1 of 1, from 352 to 417: score 97.1, E = 3e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTPL++++g+++lL++ t l++ q
AE017285_2 352 AKSAFLANMSHEIRTPLNGLLGMLDLLEA---------TGLDAGQ-- 387

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eyl ++r+++rl +L+ d+Ldlsrieag
AE017285_2 388 ----------AEYLGMARRSGRRLTDLLGDILDLSRIEAG 417

AE017285_2666: domain 1 of 1, from 633 to 698: score 94.1, E = 2.1e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHELRTPL++++g+++lL++ ++l+ +q
AE017285_2 633 AKSEFLANMSHELRTPLNGMLGMLQLLEA---------GDLDRDQ-- 668

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+++++l++++ llr ++d+Ldlsrieag
AE017285_2 669 ----------NELVHIALDSGRTLLRVLSDILDLSRIEAG 698

AE017285_1557: domain 1 of 1, from 658 to 723: score 87.9, E = 1.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+eflan+sHE+RTPL++I g++ +L + + l + q
AE017285_1 658 AKDEFLANMSHEIRTPLNGIFGMLRMLAD---------ASLAPRQ-- 693

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ e + r+ +rl +L+ d+Ld+sri+ag
AE017285_1 694 ----------QELAEMAMRSCRRLADLLTDVLDISRIDAG 723

AE017285_3031: domain 1 of 1, from 570 to 635: score 87.7, E = 1.4e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTPL++++g+++lL++ ++l+++q
AE017285_3 570 AKSIFLANMSHEIRTPLNGVLGMLQLLED---------APLTSDQ-- 605

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l+++ ++++ ll ind+Ld++r+++
AE017285_3 606 ----------QELLHVASQSSRNLLTVINDILDFTRLGSV 635

AE017285_3254: domain 1 of 1, from 436 to 501: score 87.5, E = 1.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla++sHELRTPL++++g+++lL e + + ++
AE017285_3 436 AKSEFLAHMSHELRTPLNGVMGMLQLLDE---------HVAAPQG-- 471

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+++l++++ llr+++d+Ldlsrieag
AE017285_3 472 ----------RAWLDVALESSRALLRILSDILDLSRIEAG 501

AE017285_0013: domain 1 of 1, from 367 to 434: score 83.3, E = 2.4e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TPLt+I+gyae+Lle ++++s eq+
AE017285_0 367 IRRDFVANVSHELKTPLTSIKGYAETLLE--------SPPASCEQA- 404

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +til+ a+++ +++n lL l+r e+
AE017285_0 405 ----------GAFMRTILKNANHMTKMVNSLLVLARSEHK 434

AE017285_0678: domain 1 of 1, from 141 to 206: score 79.8, E = 2.4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fla++sHE+R+ L++I g++el l+ t+ls eq
AE017285_0 141 AKTSFLAGMSHEIRNTLNGIVGMTELVLD---------TPLSGEQ-- 176

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l+t+l ++e ll L+ d+Ld+sr+ea
AE017285_0 177 ----------RESLNTVLASSETLLTLLHDVLDFSRLEAR 206

AE017285_2400: domain 1 of 1, from 510 to 575: score 78.5, E = 5.5e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTPL+aI+g++el l ++ s
AE017285_2 510 AKSVFLANMSHEIRTPLNAIIGLTELTLQ---------EPISQGV-- 545

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l+ +l++ae ll+ +ndlLdlsr e+g
AE017285_2 546 ----------GENLRGVLHSAEALLAVVNDLLDLSRVESG 575

AE017285_0619: domain 1 of 1, from 249 to 315: score 76.8, E = 1.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks flan+sH++RTPLt+I+g+a+lL++ + +++e r
AE017285_0 249 MKSAFLANMSHDMRTPLTGIIGMADLLEA---------PGCPPERR- 285

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ ++ ++ ll+++nd+ d+s +e+g
AE017285_0 286 ----------SAYIAQLKGASANLLEIVNDITDYSCLESG 315

AE017285_3044: domain 1 of 1, from 846 to 912: score 76.8, E = 1.7e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+f+an+sHE+RTPL++I+g a+++l+ te ++ +
AE017285_3 846 LKSQFVANISHEMRTPLSGILGIADVALT---------TEGNPALL- 882

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y++ +++ ae ll indlLd+sr+eag
AE017285_3 883 ----------RNYFSMVQNVAEGLLGVINDLLDFSRLEAG 912

AE017285_2664: domain 1 of 1, from 259 to 327: score 74.0, E = 1.1e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fl +++H+LR+P+++Irg++ +Ll+ ++ ++l+ +q
AE017285_2 259 LKNRFLGMAAHDLRNPINGIRGFTRMLLD------GILGPLNTDQ-- 297

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l+t++++++ +l L+ndlLd + ie+g
AE017285_2 298 ----------RGILSTVHEASNDMLLLVNDLLDVTVIESG 327

AE017285_3048: domain 1 of 1, from 265 to 330: score 72.0, E = 3.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ +fla++ HE RTP+t+I+g++++ l+ + l +
AE017285_3 265 AMADFLAAITHEVRTPMTGIIGLLDISLR---------GQLEPRL-- 300

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re le+++++++ ll+ in +Ld+srieag
AE017285_3 301 ----------REHLEIVRSSSHALLDVINGVLDFSRIEAG 330

AE017285_0538: domain 1 of 1, from 580 to 645: score 67.4, E = 7.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++a+l+HE+++PL +I+ yaelL++ + +++
AE017285_0 580 SVGRLAAGLAHEINNPLGVIMCYAELLQT---------QVGDSQA-- 615

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l++ilr + + +r ++dlLd++r
AE017285_0 616 ----------RHDLDIILRHTLQAQRVVRDLLDFARPKDT 645

AE017285_0941: domain 1 of 1, from 585 to 649: score 63.9, E = 7.5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ a+l+HE+++PL +I+ yaelL+ +++eq
AE017285_0 585 TVGKLSAGLAHEINNPLGVILCYAELLRQ----------GATAEQ-- 619

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l +ilr +++ ++ ++dlLd++r a
AE017285_0 620 ----------QDDLGIILRHTRQAQKVLRDLLDFARPKAF 649

AE017285_1412: domain 1 of 1, from 350 to 416: score 59.4, E = 1.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a+++HE+R+PL+a+rg+a+ ++l + +++e+
AE017285_1 350 ALGTLAAGVAHEIRNPLSALRGFAQYFAKKL------VGRQPDET-- 388

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y +t+ rea+rl+r i dlL lsr +a
AE017285_1 389 ------------YAQTMVREADRLNRVITDLLYLSRPRAM 416

AE017285_3137: domain 1 of 1, from 271 to 337: score 58.1, E = 3.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++ +++HE+R+PL aI g+a Ll+ ++l+e
AE017285_3 271 AIGELATYIAHEIRNPLFAIGGFANSLLR--------LPTLDETA-- 307

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++il+e++rl+++++ +L ++r +
AE017285_3 308 ----------RGKVQVILEESRRLDNILRSILNFARPTTS 337

AE017285_2383: domain 1 of 1, from 113 to 188: score 57.8, E = 3.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkv.lagdtelseeqr
+ ++a+++HE ++PLtaI g+ae +l+++ +++ d++l ++
AE017285_2 113 TVGMLAAGVAHEVNNPLTAINGFAEGILRRVKRLrGSVDPDLHADL- 158

lpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y til e +r+++++ lL++sr +
AE017285_2 159 -----------TDYAGTILGECRRCQEIVHSLLTFSRPHSS 188

AE017285_3206: domain 1 of 1, from 253 to 351: score 56.7, E = 8.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +a+++HE+R+PL Ir aelLl+
AE017285_3 253 SMGRVIASIAHEIRNPLGIIRSSAELLLK------------------ 281

peLR.l................................edpeyreyleti
R +++++++++++++++ +++++++++++++ ++ d + r++le i
AE017285_3 282 ---RaAngggsggggsngsggisgsngsggsngnrasnGDAMSRRILEAI 328

lreaerllrLindlLdlsrieag<-*
++e+ rl++ +nd+Ld++r + +
AE017285_3 329 YDESMRLSQTVNDFLDYARPRKP 351

AE017285_3366: domain 1 of 1, from 426 to 492: score 53.7, E = 6.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++a+++HE+R+PL++I+gya +++ + ++++
AE017285_3 426 AVGNLAAGVAHEIRNPLSSIKGYATYFGTRF--------PEGSDD-- 462

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ +++ +e++rl+r i+dl lsr
AE017285_3 463 ----------REAARVMVQEVDRLNRVISDLIGLSRPSDI 492

AE017285_0109: domain 1 of 1, from 184 to 250: score 53.5, E = 6.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++a+++H R+PLt++++ + L++ + +l+ +q
AE017285_0 184 LVGKLAAGVAHSVRNPLTSVKLRLFSLER--------SLTLDTQQ-- 220

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re +e+i +e+++l+++++++L++sr
AE017285_0 221 ----------REDFEVIADEIRHLDAIVSNFLEFSRRPKL 250

AE017285_2574: domain 1 of 1, from 242 to 308: score 51.6, E = 2.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l n++H+LRTPLt +r+ ae+ l +s e+
AE017285_2 242 NMRRMLDNVAHDLRTPLTRLRTQAEMTLL---------KGASVEE-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l + l+e +rl +++ +Ldls +e+g
AE017285_2 278 ---------CRDLLARQLSEYDRLVQMVGMVLDLSEAESG 308

AE017285_2117: domain 1 of 1, from 442 to 508: score 47.6, E = 3.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ +++H++++ L +++gy+e+ l+ ++ + +
AE017285_2 442 AIGTLAGGIAHDFNNILGVMMGYTEMSLD---------QADEDSPM- 478

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ +l++++r +++i ++L++sr e++
AE017285_2 479 ----------HRRLSEVLEAGKRARDIIHQILTMSRQEEP 508

AE017285_2918: domain 1 of 1, from 515 to 584: score 47.4, E = 3.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ ++HE+++PLt I++ a+ L++++ +++ ++ +
AE017285_2 515 AWREVARRIAHEIKNPLTPIKLSAQRLERKF-------GPRVDDPV- 553

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + i +++e+l+++++++ +++++ +
AE017285_2 554 ---------FGQCTALIVKQVEHLQQMVQEFSTFAKLPEV 584

AE017285_0579: domain 1 of 1, from 432 to 503: score 46.4, E = 6.8e-13
*->akseflanlsHELRTPLtaIrg...yaelLleeldkvlagdtelsee
+++e+ a+++HEL++PL+aIr++++y+ ++le++ + ++e
AE017285_0 432 SLGEMSAGVAHELNQPLNAIRMgsdYLNMALEQG-------LPVPPE 471

qrlpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
q+ re + i +++r ++in l+ + r +
AE017285_0 472 QL-----------REVTLDICGQVDRATEIINTLRSFGRKSEI 503

AE017285_0119: domain 1 of 1, from 271 to 337: score 46.2, E = 8.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++++HE+++PL ++++ L e + ++e +r
AE017285_0 271 TIGQLASGVAHEINNPLGGVILCFRNLTE---------GGMDEATR- 307

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +e+i++ +e ++r++++l+ ++r
AE017285_0 308 ----------RQHIEVIDDGLEKIRRIVRELMHYARPAPL 337

AE017285_0269: domain 1 of 1, from 525 to 596: score 42.9, E = 6.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++ +++HEL++PLt+I++++ Ll+ + ++e+ ++
AE017285_0 525 TLGEMATGVAHELNQPLTVIKAASGFLLR--------KARKGEPVAP 563

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ L ++ ++ ++r +r+i+ ++++ r
AE017285_0 564 DVL-------STMTAEMDAHVDRASRIIEHMREFGRKSDI 596

AE017285_0739: domain 1 of 1, from 430 to 496: score 42.9, E = 6.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e++a+++HE++ P +aI+ a+lL e ++ ++ +
AE017285_0 430 TIGELAAGVAHEINSPANAIINCADLLME---------DAFDSAMV- 466

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ ++i++e++r ++ +lL ++r + +
AE017285_0 467 ----------RDMARRIRSEGQRVAAITHNLLAFARERKP 496

AE017285_0139: domain 1 of 1, from 335 to 408: score 42.9, E = 6.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a+++HE+++P++ ++ a +++ la +e ++
AE017285_0 335 ALGEMAAGIAHEINNPVAIMMEEAGWIED----ILADLGEGNPAA-- 375

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
pe+++ i+++++r++++ lL ++r
AE017285_0 376 -------PEIARSAAQIRSQGKRCRDITHKLLSFARKSDR 408

AE017285_1950: domain 1 of 1, from 615 to 705: score 42.7, E = 7.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldk.....v.lagdtel
+ + ++a+++HE+++PL aI+ ++ L+++l + + +v++ ++ l
AE017285_1 615 SVGALAAGMAHEINNPLGAILQGVQNLRRRLTAdlpanVnATSEVGL 661

seeqrlpeLR..ledpeyreyletilreaerllrLindlLdlsrieag<-
+ eq LR e + + +l+ i++++er r+++ +L++sr +g
AE017285_1 662 TMEQ----LRayVESRQIPMLLDGIREAGERAGRIVSHMLTFSRRSQG 705

*

AE017285_1 - -

AE017285_0677: domain 1 of 1, from 433 to 504: score 41.7, E = 1.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++ +++HE+++PL+a+r+ya L++ + ++++ +r
AE017285_0 433 ALGTLATGVAHEINQPLSALRLYAGGLEMLV-------EKRPVVDR- 471

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++L e l++ilrea+r++++i+ ++ l +
AE017285_0 472 DML-------LERLSRILREADRIRDIIEHMRALVTHGDI 504

AE017285_3318: domain 1 of 1, from 356 to 422: score 41.7, E = 1.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+se++ +sHEL+TP+ ++ ++aelL + ++ ++++
AE017285_3 356 LRSEMMDWISHELKTPVQSLGLAAELLGR---------QDTQDDDM- 392

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++ti+++a rl+ ++++d++r++
AE017285_3 393 ----------RLLVDTIREDAVRLRTVSRQFMDIARMRVD 422

AE017285_2533: domain 1 of 1, from 252 to 342: score 39.4, E = 6.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldk.....v.lagdtel
+ + +a+++HE+++PL+aI +a+ ++++l + ++ ++a+ t +
AE017285_2 252 SVGGVAAGMAHEINNPLSAIAQAAQNIERRLATdlagnIkAASVTGM 298

seeqrlpeLR..ledpeyreyletilreaerllrLindlLdlsrieag<-
+ e LR+ le +++ +l i+++ r +++++Ld+sr
AE017285_2 299 DLEA----LRnyLEARGVPMLLGHIRDACARAATIVRNMLDFSRRSDS 342

*

AE017285_2 - -

AE017285_3008: domain 1 of 1, from 768 to 834: score 38.0, E = 1.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++sH++++ Lt+I+ +el+ +++ ++++ +
AE017285_3 768 AIGTLAGGISHDFNNILTSIINSIELAINDV--------AADSLT-- 804

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l ++l++a+r +rL+ ++L++sr +
AE017285_3 805 ----------FTDLMRALKAAQRGSRLVKQILTFSRPSVE 834

AE017285_2948: domain 1 of 1, from 347 to 419: score 37.1, E = 3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++a+++HE+++PL+ I a l+ + + a +++ + ++r
AE017285_2 347 SIGRLAAGVAHEINNPLAIINEKAGLAAD----LIALSQDFPQKER- 388

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++e i r+++r++++ +lL +sr
AE017285_2 389 ---------FSAIVEAISRSVDRCRSITHRLLGFSRRMDA 419

AE017285_0081: domain 1 of 1, from 301 to 391: score 36.9, E = 3.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++HE+++PL++I+ a++ ++ + + + + ++
AE017285_0 301 SLGGLAAGMAHEINNPLAVILQGADTVQR--------RLAPGLPANR 339

peLR...l.........edpeyreyletilreaerllrLindlLdlsrie
+ +R+ +l+ + ++ e + +++ i ++++r ++++++L + r +
AE017285_0 340 DIAReigLdldlmhtylERRKLPRFIAGIAEAGRRAADIVENMLSFGRGD 389

ag<-*
+g
AE017285_0 390 EG 391

AE017285_2953: domain 1 of 1, from 136 to 210: score 29.7, E = 3.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++ +++HE+++P++ I +a +++ l+++++ + +
AE017285_2 136 SMGRMAEGVAHEINNPVNIIANAAGWIED-----LLEEPDIASGPH- 176

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e r+ l +i++++ r +++ + lL + r +
AE017285_2 177 ------VAEMRRTLAKIKQQGVRVREITRKLLCFGRGLDP 210

AE017285_0799: domain 1 of 1, from 150 to 216: score 28.6, E = 7.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +l++lsH++ + L++I+g+ae++++ + +++ +
AE017285_0 150 VQAALLRGLSHDFGNALASIMGFAEIART---------RPVDDPLL- 186

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ +l+ + l+L ++ + ++ +++
AE017285_0 187 ----------ARSLDNVLKGCAQALSLMDRARAMAGRQSP 216


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-15 6 0|=
-14 47 0|=====
-13 106 2|*=========
-12 217 77|======*=============
-11 349 400|================================ *
-10 528 743|================================================ *
-9 596 767|======================================================= *
-8 545 574|================================================== *
-7 373 362|================================*=
-6 222 208|==================*==
-5 145 114|==========*===
-4 79 61|=====*==
-3 43 32|==*=
-2 31 16|=*=
-1 20 8|*=
0 10 4|*
1 3 2|*
2 2 1|*
3 2 0|=
4 2 0|=
5 0 0|
6 1 0|=
7 0 0|
8 0 0|
> 9 52 -|=====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 405.4476
P(chi-square) = 0

Total sequences searched: 3379

Whole sequence top hits:
tophits_s report:
Total hits: 42
Satisfying E cutoff: 42
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 39
Satisfying E cutoff: 39
Total memory: 36K


Acknowledgements:

This research is funded by:

Developed by: