Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
35 projects found  

2 accessions found for   

Data for AE017285  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: AE017285.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE017285_0884 CDS_978190-979902 130.5 5.1e-37 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE017285_0884 1/1 377 460 .. 1 94 [] 130.5 5.1e-37

Alignments of top-scoring domains:
AE017285_0884: domain 1 of 1, from 377 to 460: score 130.5, E = 5.1e-37
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E+HHRVKNNLQ++ SLL+LQa ++ d +++L +s+nR++S
AE017285_0 377 EVHHRVKNNLQLVVSLLNLQASSVYDVRD-----RALLLDSRNRIAS 418

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
mAl+HEeLY+s+dl+ vdf++Yl +L++ L +++ i+++lDl
AE017285_0 419 MALVHEELYRSDDLSGVDFADYLPRLARKLQSAF-----VIDVELDL 460


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-15 17 0|==
-14 53 0|====
-13 105 21|=*=====
-12 282 221|==============*====
-11 844 617|=========================================*===============
-10 719 799|================================================ *
-9 521 675|=================================== *
-8 384 453|========================== *
-7 182 269|============= *
-6 147 149|=========*
-5 48 80|==== *
-4 36 42|==*
-3 20 22|=*
-2 11 11|*
-1 4 6|*
0 4 3|*
> 1 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 528.1561
P(chi-square) = 0

Total sequences searched: 3379

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: