Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

1 accessions found for Wolbachia endosymbiont strain TRS of Brugia malayi  

Data for AE017321  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE017321.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE017321_0127 CDS_171045-169618 76.8 4e-22 1
AE017321_0706 CDS_923625-926105 36.1 1.3e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE017321_0127 1/1 239 308 .. 1 87 [] 76.8 4e-22
AE017321_0706 1/1 438 504 .. 1 87 [] 36.1 1.3e-10

Alignments of top-scoring domains:
AE017321_0127: domain 1 of 1, from 239 to 308: score 76.8, E = 4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k +f+a++ HELRTPL+aI+g+ael+++ ++l++ ++
AE017321_0 239 NKLKFFASVTHELRTPLNAIIGFAELIKN---------ETLGSMDN- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey++ i++++ +ll+Lind+Ld+s++e+
AE017321_0 276 -------YQYKEYVDDIYNAGTHLLALINDVLDFSKAESS 308

AE017321_0706: domain 1 of 1, from 438 to 504: score 36.1, E = 1.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I+g+++lLl + ++++
AE017321_0 438 AIGQLAGGIAHDFNNILTGIIGFCDLLLL--------QHSAGDPS-- 474

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i++ a+r ++L+ +lL +sr ++
AE017321_0 475 ----------FGDIIQIQQNAKRGSNLVKQLLAFSRRQTM 504


Histogram of all scores:
score obs exp (one = represents 3 sequences)
----- --- ---
-14 2 0|=
-13 15 0|=====
-12 65 18|=====*================
-11 99 95|===============================*=
-10 145 177|================================================= *
-9 157 182|===================================================== *
-8 119 136|======================================== *
-7 79 86|=========================== *
-6 43 49|=============== *
-5 32 27|========*==
-4 24 14|====*===
-3 10 7|==*=
-2 4 4|=*
-1 7 2|*==
0 0 1|*
1 0 0|
2 1 0|=
3 0 0|
4 0 0|
> 5 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 139.0552
P(chi-square) = 1.616e-25

Total sequences searched: 805

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: