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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Idiomarina loihiensis L2TR  

Data for AE017340  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE017340.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE017340_1721 CDS_1863048-1865648 96.4 3.7e-27 1
AE017340_2098 CDS_2248242-2246947 85.3 5.2e-24 1
AE017340_1443 CDS_1563771-1561837 82.2 3.8e-23 1
AE017340_1648 CDS_1775927-1776958 67.4 6.2e-19 1
AE017340_1199 CDS_1292373-1291366 63.6 7.2e-18 1
AE017340_1636 CDS_1763288-1761879 58.8 1.6e-16 1
AE017340_0095 CDS_99882-101105 56.7 6.4e-16 1
AE017340_0320 CDS_330089-331399 56.1 9.4e-16 1
AE017340_2424 CDS_2610624-2609503 55.8 1.2e-15 1
AE017340_2421 CDS_2607354-2605993 53.0 7.1e-15 1
AE017340_2140 CDS_2288668-2292015 50.1 4.8e-14 1
AE017340_2571 CDS_2777695-2776271 49.7 6.4e-14 1
AE017340_1993 CDS_2146204-2142731 46.4 5.3e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE017340_1721 1/1 207 272 .. 1 87 [] 96.4 3.7e-27
AE017340_2098 1/1 205 272 .. 1 87 [] 85.3 5.2e-24
AE017340_1443 1/1 272 337 .. 1 87 [] 82.2 3.8e-23
AE017340_1648 1/1 118 186 .. 1 87 [] 67.4 6.2e-19
AE017340_1199 1/1 108 174 .. 1 87 [] 63.6 7.2e-18
AE017340_1636 1/1 243 308 .. 1 87 [] 58.8 1.6e-16
AE017340_0095 1/1 196 260 .. 1 87 [] 56.7 6.4e-16
AE017340_0320 1/1 224 284 .. 1 87 [] 56.1 9.4e-16
AE017340_2424 1/1 143 208 .. 1 87 [] 55.8 1.2e-15
AE017340_2421 1/1 233 294 .. 1 87 [] 53.0 7.1e-15
AE017340_2140 1/1 760 824 .. 1 87 [] 50.1 4.8e-14
AE017340_2571 1/1 251 316 .. 1 87 [] 49.7 6.4e-14
AE017340_1993 1/1 792 857 .. 1 87 [] 46.4 5.3e-13

Alignments of top-scoring domains:
AE017340_1721: domain 1 of 1, from 207 to 272: score 96.4, E = 3.7e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+eflan+sHE+RTP++aI g+a l+l+ tel+ +q
AE017340_1 207 SKGEFLANMSHEIRTPINAIVGMANLCLK---------TELTQKQ-- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+++i+++++ ll ind+Ld+s+i+ag
AE017340_1 243 ----------KRYIKVIDSSSQALLGVINDILDFSKIDAG 272

AE017340_2098: domain 1 of 1, from 205 to 272: score 85.3, E = 5.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef+an+sHEL+TPLt+++gy+e++ e + ++++ +l
AE017340_2 205 LRREFVANVSHELKTPLTVLQGYLEMMDE---------PQQTPPAML 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++e + ++ r+ +L+++lL+lsr+e++
AE017340_2 243 ----------KKAVENMNAQSTRMANLVDQLLTLSRMETP 272

AE017340_1443: domain 1 of 1, from 272 to 337: score 82.2, E = 3.8e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ flan+sHE+RTPL++I+g a++L+ t+l++ q
AE017340_1 272 AKNVFLANMSHEIRTPLHGILGIASVLES---------TDLNPYQ-- 307

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l ti++++++ll +nd+Ldl+++e+g
AE017340_1 308 ----------QQLLGTIKNSGDYLLTTLNDVLDLTQAEEG 337

AE017340_1648: domain 1 of 1, from 118 to 186: score 67.4, E = 6.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s l ++sH+LRTPL++++g++++L++++ + l+e++r
AE017340_1 118 LRSNILLSVSHDLRTPLASVIGNLSTLQAYQ-------ERLPEQER- 156

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l+ +l+e++rl r i++lL+ +r+++g
AE017340_1 157 ----------AELLQGALDESDRLHRYIENLLQATRLQHG 186

AE017340_1199: domain 1 of 1, from 108 to 174: score 63.6, E = 7.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+l+H++RTPL+a ++ya+ L+ ++ s+ ++
AE017340_1 108 SMGKMVASLAHQIRTPLSAAILYAQNLKQ---------GKISAAKQ- 144

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++l+ +++l++++nd+L +++ +++
AE017340_1 145 ----------QRFSDKLLSRLHSLEQQVNDMLLFAKSGEQ 174

AE017340_1636: domain 1 of 1, from 243 to 308: score 58.8, E = 1.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a++sHELRTPL+aI+ +ae + +e e+
AE017340_1 243 REKRFIADASHELRTPLSAIQVHAENIIH---------AESLEDS-- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i + +er+++L+n+lL l r+++
AE017340_1 279 ----------KQSGKAIFSTVERMSHLVNQLLRLNRLDSL 308

AE017340_0095: domain 1 of 1, from 196 to 260: score 56.7, E = 6.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f a+++HELRTPL+++++ ++ l +++eq
AE017340_0 196 REKRFSADAAHELRTPLASLKAQIQSRLG----------SATSEQ-- 230

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ +l+++erl +L++ lL+ls++e +
AE017340_0 231 ----------QNELQPLLDSTERLVKLVESLLQLSKAELP 260

AE017340_0320: domain 1 of 1, from 224 to 284: score 56.1, E = 9.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir++ae++ +e+ +
AE017340_0 224 DRNLLMAGVSHDLRTPLTRIRLAAEMMPQ------------GEDCL- 257

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i+++++ ++++i+++ d+ r++++
AE017340_0 258 -------------AQGIIEDIDDMNDIIDQFIDYVRLDQQ 284

AE017340_2424: domain 1 of 1, from 143 to 208: score 55.8, E = 1.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + +l++++HE+++PL ++rg+a+lL + l++e +
AE017340_2 143 ATQHLLRGMAHEIKNPLGGLRGAAQLLAR----------QLPDESL- 178

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey++ i+ +++rl+ L+++lL + ++
AE017340_2 179 ----------TEYTDLIITQSDRLRYLVDRLLGPVKRGES 208

AE017340_2421: domain 1 of 1, from 233 to 294: score 53.0, E = 7.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++l+++sHELR P++ ++ +++l ++++e++
AE017340_2 233 AQRRLLSDVSHELRSPMARMQVALDL------------ADCNEDD-- 265

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++r++erl+ +i+++L lsr+e+g
AE017340_2 266 -----------PNWQQLRRDTERLSVIIERILSLSRLENG 294

AE017340_2140: domain 1 of 1, from 760 to 824: score 50.1, E = 4.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+f+a++sH+L +P +a ++++e+L+ l+ e
AE017340_2 760 SKSRFFAAVSHDLMQPFNAASLFCEMLQS----------RLPNEY-- 794

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i+r++++ ++L+ lLd+++++ag
AE017340_2 795 ----------LPLAVNIQRSLDHAEELLTMLLDMTKLDAG 824

AE017340_2571: domain 1 of 1, from 251 to 316: score 49.7, E = 6.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + +++++HEL PLt+I g a+ Ll+ +++e+
AE017340_2 251 AIGSVASGVAHELGAPLTVIDGRASRLLR---------NHKDEDS-- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ ++ +++rl L+n+lL +sr +
AE017340_2 287 ----------QRQLKAVRGQVQRLTGLVNQLLAFSRTPVQ 316

AE017340_1993: domain 1 of 1, from 792 to 857: score 46.4, E = 5.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla +sH++ +PL+a r+y+++++e else
AE017340_1 792 SKTRFLALASHDILQPLNAARLYLSAIQE---------KELSERN-- 827

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++ ++ + ++L++ lL ++++++g
AE017340_1 828 ----------LSLVGKLDTALGSTEHLLSTLLSIAKMDQG 857


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-15 1 0|=
-14 1 0|=
-13 25 1|*==
-12 102 60|======*=====
-11 249 311|============================ *
-10 421 577|=============================================== *
-9 487 596|======================================================= *
-8 473 446|=================================================*===
-7 315 281|===============================*===
-6 224 162|=================*=======
-5 129 88|=========*=====
-4 81 47|=====*===
-3 34 25|==*=
-2 21 13|=*=
-1 16 6|*=
0 11 3|*=
1 5 1|*
2 2 0|=
3 6 0|=
4 4 0|=
5 0 0|
6 2 0|=
7 2 0|=
8 0 0|
9 0 0|
10 1 0|=
11 1 0|=
12 0 0|
13 1 0|=
> 14 14 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 195.1619
P(chi-square) = 7.494e-36

Total sequences searched: 2628

Whole sequence top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: