Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

1 accessions found for Idiomarina loihiensis L2TR  

Data for AE017340  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: AE017340.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE017340_0312 CDS_322225-323307 84.4 8.8e-25 1
AE017340_0183 CDS_199547-197751 64.2 7.8e-19 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE017340_0312 1/1 171 239 .. 1 70 [] 84.4 8.8e-25
AE017340_0183 1/1 396 464 .. 1 70 [] 64.2 7.8e-19

Alignments of top-scoring domains:
AE017340_0312: domain 1 of 1, from 171 to 239: score 84.4, E = 8.8e-25
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe.earealde
ER+RIAR+LHD +g++Ls+i+l+++la+++l k +ea e+l e
AE017340_0 171 ERERIARDLHDILGHTLSSIILKSDLAKAQL--SKQRYdEASEQLVE 215

irelarealaevRrllgdLRpaal<-*
+ e+are+l++vR+ ++++++++l
AE017340_0 216 LSEIARESLSQVRQSVSGYKHGGL 239

AE017340_0183: domain 1 of 1, from 396 to 464: score 64.2, E = 7.8e-19
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+ IARELHDs++Q+Ls +k+q+ ++++ ++ + d + +++ e+
AE017340_0 396 ERTVIARELHDSLAQALSYLKIQVTRLHKGIE-KNDRATIDDVSNEL 441

relarealaevRrllgdLRpaal<-*
re ++ a++++R+ll+++R ++
AE017340_0 442 REGLNSAYRQLRELLTTFRLKVD 464


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-14 11 0|==
-13 49 0|======
-12 80 29|===*=====
-11 157 240|================== *
-10 401 558|============================================= *
-9 509 634|========================================================= *
-8 449 489|================================================== *
-7 321 307|==================================*=
-6 236 174|===================*=======
-5 180 93|==========*=========
-4 87 48|=====*====
-3 62 25|==*====
-2 39 12|=*===
-1 24 6|*==
0 14 3|*=
1 3 1|*
2 1 0|=
3 1 0|=
4 1 0|=
> 5 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 477.3604
P(chi-square) = 0

Total sequences searched: 2628

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: