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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

1 accessions found for Rickettsia prowazekii str. Madrid E  

Data for AJ235269  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AJ235269.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AJ235269_0219 CDS_288213-289706 86.4 7.8e-25 1
AJ235269_0448 CDS_576645-579410 72.5 7e-21 1
AJ235269_0410 CDS_524675-523362 64.2 1.6e-18 1
AJ235269_0584 CDS_777024-775219 54.0 1.2e-15 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AJ235269_0219 1/1 268 333 .. 1 87 [] 86.4 7.8e-25
AJ235269_0448 1/1 695 763 .. 1 87 [] 72.5 7e-21
AJ235269_0410 1/1 230 288 .. 1 87 [] 64.2 1.6e-18
AJ235269_0584 1/1 373 443 .. 1 87 [] 54.0 1.2e-15

Alignments of top-scoring domains:
AJ235269_0219: domain 1 of 1, from 268 to 333: score 86.4, E = 7.8e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+an+sHELRTPL+aI+g++e+L + +e+
AJ235269_0 268 SNTKFFANISHELRTPLNAIIGFSEILMS---------ERDTEKS-- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y++ i++++++ll++ind+Ldls++ a
AJ235269_0 304 ----------KNYIKDIHDAGKHLLSMINDILDLSKASAD 333

AJ235269_0448: domain 1 of 1, from 695 to 763: score 72.5, E = 7e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k efl+n+ HE++TPLt+I+ + e+L +++ ++ +e+qr
AJ235269_0 695 LKHEFLRNINHEINTPLTGIISLGETLWANY-------DKFNEDQR- 733

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++e+i +++ rl++ in++Ld+s++ +
AJ235269_0 734 ----------RNAVEVIAKSSIRLNSFINNILDFSKLSSL 763

AJ235269_0410: domain 1 of 1, from 230 to 288: score 64.2, E = 1.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la++sH+LRTPLt +++ +el++e
AJ235269_0 230 KRTNMLAMISHDLRTPLTRMKLQLELIEE------------------ 258

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+++ +++++ ++++in Ld+++ e+
AJ235269_0 259 ----------SEAIKGLKQDILTMQQMINSYLDFAKGEST 288

AJ235269_0584: domain 1 of 1, from 373 to 443: score 54.0, E = 1.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a s+ + ++HE+++PLt I++++e Ll+++ ++e +e+
AJ235269_0 373 AWSDVAKKVAHEIKNPLTPILLASERLLKKF------SSEINEKS-- 411

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++ yl+ i+r ++ + ++++++ ++r+ a+
AJ235269_0 412 --------EFESYLKMIIRHTNDIKNIVSEFVLFARLPAP 443


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-14 3 0|=
-13 9 0|===
-12 38 19|====*=====
-11 91 98|======================= *
-10 179 183|=============================================*
-9 156 189|======================================= *
-8 106 141|=========================== *
-7 94 89|======================*=
-6 69 51|============*=====
-5 47 28|======*=====
-4 12 15|===*
-3 10 7|=*=
-2 11 4|*==
-1 1 2|*
0 1 1|*
1 1 0|=
2 0 0|
> 3 6 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 54.3716
P(chi-square) = 1.604e-08

Total sequences searched: 834

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: