Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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Data for AJ749949  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AJ749949.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AJ749949_1736 CDS_1826721-1824040 59.6 6.5e-17 1
AJ749949_0094 CDS_99108-97681 57.0 3.6e-16 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AJ749949_1736 1/1 664 732 .. 1 87 [] 59.6 6.5e-17
AJ749949_0094 1/1 249 314 .. 1 87 [] 57.0 3.6e-16

Alignments of top-scoring domains:
AJ749949_1736: domain 1 of 1, from 664 to 732: score 59.6, E = 6.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +l+++sH+L+TPL++I+g+++ ++ + + ++eq+
AJ749949_1 664 LQKSMLSSVSHDLKTPLASIMGALSSIKSYK-------DSFNPEQQ- 702

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l+ +l e++rl++ i+++ ++ + ++g
AJ749949_1 703 ----------VEMLDLALTESKRLDSYIDNIIQMLKVDSG 732

AJ749949_0094: domain 1 of 1, from 249 to 314: score 57.0, E = 3.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f +++HEL+TP++++++++e++l+ + +++
AJ749949_0 249 REKRFSGDAAHELKTPIAGVKTLVEIALA----------SDDIDEI- 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le+i+++++r +++i++lL+lsri+ +
AJ749949_0 285 ----------KQKLERIKSSTNRYSHIIDQLLTLSRIQPN 314


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-14 3 0|=
-13 31 1|*=====
-12 81 36|=====*========
-11 199 190|===============================*==
-10 280 352|=============================================== *
-9 323 364|====================================================== *
-8 232 272|======================================= *
-7 177 171|============================*=
-6 140 98|================*=======
-5 64 54|========*==
-4 23 29|====*
-3 16 15|==*
-2 6 8|=*
-1 9 4|*=
0 8 2|*=
1 6 1|*
2 2 0|=
> 3 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 100.5580
P(chi-square) = 4.214e-17

Total sequences searched: 1804

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: