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Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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76 projects found  

1 accessions found for Neisseria meningitidis Z2491  

Data for AL157959  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AL157959.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AL157959_0602 CDS_657370-658620 51.6 1.4e-14 1
AL157959_1597 CDS_1748697-1750214 44.9 1e-12 1
AL157959_0714 CDS_783686-782280 44.8 1.2e-12 1
AL157959_0148 CDS_146875-144755 38.0 9.4e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AL157959_0602 1/1 193 258 .. 1 87 [] 51.6 1.4e-14
AL157959_1597 1/1 312 381 .. 1 87 [] 44.9 1e-12
AL157959_0714 1/1 236 299 .. 1 87 [] 44.8 1.2e-12
AL157959_0148 1/1 483 555 .. 1 87 [] 38.0 9.4e-11

Alignments of top-scoring domains:
AL157959_0602: domain 1 of 1, from 193 to 258: score 51.6, E = 1.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a+++HELRTP+ta+++ ae L + l+++
AL157959_0 193 HRQRFVADAAHELRTPMTALSLQAERLNN---------MSLPPDA-- 228

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++++++r +L+++lL l+r ++
AL157959_0 229 ----------ARQPAVLQQSIRRNKHLLEQLLALARSQSD 258

AL157959_1597: domain 1 of 1, from 312 to 381: score 44.9, E = 1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++anl+HE+R+P++aIr + +lL+e+++ +++++
AL157959_1 312 ALGQLTANLAHEIRNPMSAIRHANDLLRENME-----AGAADPFN-- 351

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++i+ + r++++++d+ l +
AL157959_1 352 ----------AKLCKIIDGNVCRIDKMLEDISSLNKRNKT 381

AL157959_0714: domain 1 of 1, from 236 to 299: score 44.8, E = 1.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +l ++sHE+R PL+ +++ + l+++ ++ +q
AL157959_0 236 KERHLLHHVSHEMRSPLARMQAIVGLIQA-----------QPQKQ-- 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl++++ e+ r++ L +lL+lsr+e+
AL157959_0 270 ----------EQYLKRLEGELTRMDTLAGELLTLSRLETS 299

AL157959_0148: domain 1 of 1, from 483 to 555: score 38.0, E = 9.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e + l+HE+R+PLt I++ ae L +l ++l+e++++
AL157959_0 483 AWGEVAKRLAHEIRNPLTPIQLSAERLAWKLG------GKLDEQDAQ 523

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ti++++ l ++++ ++ ++r +
AL157959_0 524 IL--------TRSTDTIIKQVAALKEMVEAFRNYARSPSL 555


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 1 0|=
-14 7 0|=
-13 33 1|*====
-12 122 43|======*===========
-11 204 226|============================== *
-10 345 419|================================================== *
-9 384 433|======================================================= *
-8 289 324|========================================== *
-7 216 204|=============================*=
-6 135 117|================*===
-5 67 64|=========*
-4 39 34|====*=
-3 35 18|==*==
-2 10 9|=*
-1 7 5|*
0 5 2|*
> 1 10 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 185.8508
P(chi-square) = 6.34e-34

Total sequences searched: 1993

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: