Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
76 projects found  

1 accessions found for Neisseria meningitidis Z2491  

Data for AL157959  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: AL157959.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AL157959_1255 CDS_1315989-1317761 69.5 1.6e-20 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AL157959_1255 1/1 386 454 .. 1 70 [] 69.5 1.6e-20

Alignments of top-scoring domains:
AL157959_1255: domain 1 of 1, from 386 to 454: score 69.5, E = 1.6e-20
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe.earealde
ER+ IA+ LHDs++Q+L+ ++lq++++++++ +++ +ea+e +
AL157959_1 386 ERNLIAQGLHDSIAQALTFLNLQVQMLETAF--AENKReEAAENIGF 430

irelarealaevRrllgdLRpaal<-*
i++ ++e++++vR+ll ++R+ +
AL157959_1 431 IKTGVQECYEDVRELLLNFRTKIS 454


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-14 16 0|===
-13 55 0|========
-12 93 21|==*===========
-11 132 174|=================== *
-10 325 405|=============================================== *
-9 364 461|==================================================== *
-8 282 355|========================================= *
-7 237 223|===============================*==
-6 152 126|=================*====
-5 121 67|=========*========
-4 50 35|====*===
-3 30 18|==*==
-2 22 9|=*==
-1 13 4|*=
0 5 2|*
1 5 1|*
2 4 0|=
3 1 0|=
4 0 0|
> 5 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 381.9042
P(chi-square) = 0

Total sequences searched: 1993

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: