Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

3 accessions found for Salmonella enterica subsp. enterica serovar Typhi str. CT18  

Data for AL513382  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AL513382.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AL513382_2873 CDS_2962058-2964814 100.2 5.5e-28 1
AL513382_0396 CDS_443048-444343 86.6 3.9e-24 1
AL513382_1587 CDS_1647071-1649833 82.3 6.2e-23 1
AL513382_2308 CDS_2330543-2327697 80.6 2e-22 1
AL513382_3239 CDS_3347350-3345014 78.9 5.7e-22 1
AL513382_3660 CDS_3822270-3819535 72.8 3e-20 1
AL513382_2603 CDS_2671646-2670261 69.6 2.5e-19 1
AL513382_3532 CDS_3675681-3677054 67.0 1.3e-18 1
AL513382_2159 CDS_2181100-2182503 63.5 1.4e-17 1
AL513382_3437 CDS_3564098-3562701 62.5 2.5e-17 1
AL513382_0683 CDS_745577-742869 61.1 6.6e-17 1
AL513382_3586 CDS_3730003-3731052 60.3 1.1e-16 1
AL513382_4589 CDS_4796535-4797959 59.6 1.7e-16 1
AL513382_1025 CDS_1094100-1092736 57.5 6.8e-16 1
AL513382_3098 CDS_3198957-3200306 55.9 1.9e-15 1
AL513382_3973 CDS_4170982-4172334 54.9 3.7e-15 1
AL513382_4163 CDS_4378836-4377757 47.7 4.1e-13 1
AL513382_1510 CDS_1579435-1580739 47.4 4.8e-13 1
AL513382_2693 CDS_2786837-2785422 36.6 5.6e-10 1
AL513382_2440 CDS_2470441-2468435 35.3 1.3e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AL513382_2873 1/1 292 357 .. 1 87 [] 100.2 5.5e-28
AL513382_0396 1/1 203 269 .. 1 87 [] 86.6 3.9e-24
AL513382_1587 1/1 395 460 .. 1 87 [] 82.3 6.2e-23
AL513382_2308 1/1 469 534 .. 1 87 [] 80.6 2e-22
AL513382_3239 1/1 282 347 .. 1 87 [] 78.9 5.7e-22
AL513382_3660 1/1 444 509 .. 1 87 [] 72.8 3e-20
AL513382_2603 1/1 234 302 .. 1 87 [] 69.6 2.5e-19
AL513382_3532 1/1 238 300 .. 1 87 [] 67.0 1.3e-18
AL513382_2159 1/1 240 304 .. 1 87 [] 63.5 1.4e-17
AL513382_3437 1/1 246 312 .. 1 87 [] 62.5 2.5e-17
AL513382_0683 1/1 671 738 .. 1 87 [] 61.1 6.6e-17
AL513382_3586 1/1 129 186 .. 1 79 [. 60.3 1.1e-16
AL513382_4589 1/1 255 320 .. 1 87 [] 59.6 1.7e-16
AL513382_1025 1/1 236 302 .. 1 87 [] 57.5 6.8e-16
AL513382_3098 1/1 236 302 .. 1 87 [] 55.9 1.9e-15
AL513382_3973 1/1 233 293 .. 1 87 [] 54.9 3.7e-15
AL513382_4163 1/1 145 205 .. 1 87 [] 47.7 4.1e-13
AL513382_1510 1/1 212 272 .. 1 87 [] 47.4 4.8e-13
AL513382_2693 1/1 246 311 .. 1 87 [] 36.6 5.6e-10
AL513382_2440 1/1 447 515 .. 1 87 [] 35.3 1.3e-09

Alignments of top-scoring domains:
AL513382_2873: domain 1 of 1, from 292 to 357: score 100.2, E = 5.5e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ l l+ tel++ q
AL513382_2 292 IKSEFLANMSHELRTPLNGVIGFTRLTLK---------TELNPTQ-- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ti+r+a+ ll++ind+Ld+s++eag
AL513382_2 328 ----------RDHLNTIERSANNLLAIINDVLDFSKLEAG 357

AL513382_0396: domain 1 of 1, from 203 to 269: score 86.6, E = 3.9e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e+++e ++l +r
AL513382_0 203 ARRNFFANVSHELRTPLTVLQGYLEMMQE---------QALEGATR- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+t+++++ r++ L+ +lL+ls+ie
AL513382_0 240 ----------EKALHTMREQTYRMEGLVKQLLTLSKIEVA 269

AL513382_1587: domain 1 of 1, from 395 to 460: score 82.3, E = 6.2e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks l +sHELRTP+++++g++elL++ t+l+ eq
AL513382_1 395 RKSIHLTVISHELRTPMNGVLGAIELLQT---------TPLNIEQ-- 430

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +t+++++ +ll++in+lLd+srie+g
AL513382_1 431 ----------QGLADTARNCTLSLLAIINNLLDFSRIESG 460

AL513382_2308: domain 1 of 1, from 469 to 534: score 80.6, E = 2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ el+
AL513382_2 469 SKSMFLATVSHELRTPLYGIIGNLDLLQT---------KELPKGV-- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + +++ ll++i+d+Ld+s+ie++
AL513382_2 505 ----------DRLVTAMNNSSSLLLKIISDILDFSKIESE 534

AL513382_3239: domain 1 of 1, from 282 to 347: score 78.9, E = 5.7e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ t+l++eq
AL513382_3 282 DKTTFISTISHELRTPLNGIVGLSRILLD---------TDLTAEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ti+ +a l ++ nd+ d+ ++e
AL513382_3 318 ----------EKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

AL513382_3660: domain 1 of 1, from 444 to 509: score 72.8, E = 3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL +I+g+++lL + +l +
AL513382_3 444 AKSTFLAAMSHEIRTPLYGILGTVQLLAD---------KPLMANY-- 479

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ i +++e+ll+++nd+Ld+s ie g
AL513382_3 480 ----------RDDLQAINDSGESLLAILNDILDYSAIEVG 509

AL513382_2603: domain 1 of 1, from 234 to 302: score 69.6, E = 2.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +fl++lsHEL+TPL+++r +elL +++ ++l++eq
AL513382_2 234 QRHQFLRHLSHELKTPLASMREGTELLADQV------VGPLTPEQ-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +++++++++ l++Li++lLd+ r
AL513382_2 273 ----------KEVVDILDDSSRNLQKLIEQLLDYNRKLVD 302

AL513382_3532: domain 1 of 1, from 238 to 300: score 67.0, E = 1.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l+++sHELRTPLt +++ + lL++ +++
AL513382_3 238 SQQRLLSDISHELRTPLTRLQLGTALLRR---------RGGESKE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ ea+rl+++indlL +sr ++
AL513382_3 274 -------------LERIETEAQRLDSMINDLLVMSRNQQK 300

AL513382_2159: domain 1 of 1, from 240 to 304: score 63.5, E = 1.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPL+++rg +e++++++ ++e
AL513382_2 240 MRRDFMADISHELRTPLAVLRGELEAIQDGV-------RQFTPES-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ e+ l +L++dl +ls ++g
AL513382_2 278 -------------VTSLQAEVGTLTKLVDDLHQLSLSDEG 304

AL513382_3437: domain 1 of 1, from 246 to 312: score 62.5, E = 2.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a+++HE+R+PL++I+g+a+ e +t+++ e
AL513382_3 246 AMGHLAAGVAHEIRNPLSSIKGLAKYFAE--------RTPAGGES-- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ +++ +ea+rl+r +++lL+l + +
AL513382_3 283 ----------HELAQVMAKEADRLNRVVSELLELVKPAHL 312

AL513382_0683: domain 1 of 1, from 671 to 738: score 61.1, E = 6.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+LRTPLt++ g ae+L +l + +++++
AL513382_0 671 IRNALLAALSHDLRTPLTVLFGQAEILTLDL-------ASAGSPH-- 708

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i++ + rL+n+lLd++ri++g
AL513382_0 709 ----------ARQASEIRQHILNTTRLVNNLLDMARIQSG 738

AL513382_3586: domain 1 of 1, from 129 to 186: score 60.3, E = 1.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
AL513382_3 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSK----------ALPDPAL- 164

peLRledpeyreyletilreaerllrLindlL<-*
ey+++i+++a+rl++L+++lL
AL513382_3 165 ----------TEYTKVIIEQADRLRNLVDRLL 186

AL513382_4589: domain 1 of 1, from 255 to 320: score 59.6, E = 1.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l HEL+ PL+aIrg+ae+L+e ++ +
AL513382_4 255 DIEQYVYALTHELKSPLAAIRGAAEILRE---------GPPADVV-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++e il + r+++L++ lL +r+e+
AL513382_4 291 ----------TRFTENILAQNTRMQALVETLLRQARLENR 320

AL513382_1025: domain 1 of 1, from 236 to 302: score 57.5, E = 6.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +l+HELRTP++ ++g +++l +e+s+e+
AL513382_1 236 RLNQFADDLAHELRTPVNILLGKNQVMLS---------QERSAEE-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+++l ++e+e l+rL +++L l+r+e++
AL513382_1 272 ---------YQQALVDNIEELEGLSRLTENILFLARAEHQ 302

AL513382_3098: domain 1 of 1, from 236 to 302: score 55.9, E = 1.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HELR PL+a++ +e+++ + ++ r
AL513382_3 236 RERRFTSDAAHELRSPLAALKVQTEVAQL---------SGDDPLSR- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l ++ ++r rL+++lL+lsr+++
AL513382_3 273 ----------DKALTQLHAGIDRATRLVDQLLTLSRLDSL 302

AL513382_3973: domain 1 of 1, from 233 to 293: score 54.9, E = 3.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ e e+
AL513382_3 233 DRTLLMAGVSHDLRTPLTRIRLATEMMGE--------------ED-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i +++e ++++i+++ d+ r +++
AL513382_3 264 ----------GYLAESINKDIEECNAIIEQFIDYLRTGQE 293

AL513382_4163: domain 1 of 1, from 145 to 205: score 47.7, E = 4.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+a+++HELRTPL+++r+++elL + t+
AL513382_4 145 NERLFTADVAHELRTPLSGVRLHLELLSK---------TH------- 175

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ++++ + +++lL+l+r ++
AL513382_4 176 ----------NVDVAPLIARLDQMMDSVSQLLQLARVGQS 205

AL513382_1510: domain 1 of 1, from 212 to 272: score 47.4, E = 4.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +++ +++HELRTPL +r +e+ ++ l++++
AL513382_1 212 SKKQLIDGIAHELRTPLVRLRYRLEMSEN-----------LTPPE-- 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + r++ +l++Li++lL+++r++ +
AL513382_1 246 -------------SQALNRDIGQLEALIEELLTYARLDRP 272

AL513382_2693: domain 1 of 1, from 246 to 311: score 36.6, E = 5.6e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f a++sH+L+TPL+++++ a ++l+ + + +
AL513382_2 246 RQERFSADASHQLKTPLAVLKTQAAVALA----------SQHPHH-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e l+ + +++ +L ++lL+ls +
AL513382_2 281 ---------WYESLQAMSVTLDSTIQLTERLLQLSAVKHK 311

AL513382_2440: domain 1 of 1, from 447 to 515: score 35.3, E = 1.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l+HE+++PL+a+++y+ ++ + a+++ +s +
AL513382_2 447 VVGQTMTTLAHEINQPLNALSMYLFTAGR------AIEQGQSGQA-- 485

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l +++ ++r++++i+ l++++r +
AL513382_2 486 ----------RNTLTKAEGLINRIDAIIRSLRQFTRRAEL 515


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-16 1 0|=
-15 5 0|=
-14 25 0|==
-13 78 3|*=====
-12 224 100|=======*========
-11 488 520|=================================== *
-10 751 966|====================================================== *
-9 826 998|==========================================================*
-8 727 747|==================================================== *
-7 514 470|=================================*===
-6 306 271|===================*==
-5 211 148|==========*=====
-4 94 79|=====*=
-3 37 42|==*
-2 34 22|=*=
-1 24 11|*=
0 15 6|*=
1 5 3|*
2 6 1|*
3 2 0|=
4 0 0|
> 5 22 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 303.4922
P(chi-square) = 0

Total sequences searched: 4600

Whole sequence top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: