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Classification of phyla is from NCBI page
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3 accessions found for Sinorhizobium meliloti 1021  

Data for AL591688  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AL591688.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AL591688_1025 CDS_1121337-1119019 100.3 3.6e-28 1
AL591688_1882 CDS_2040134-2041669 94.8 1.3e-26 1
AL591688_1002 CDS_1093568-1095145 90.4 2.3e-25 1
AL591688_0392 CDS_420888-423080 83.8 1.7e-23 1
AL591688_0508 CDS_565258-566520 83.3 2.3e-23 1
AL591688_0721 CDS_797096-793692 72.7 2.3e-20 1
AL591688_0038 CDS_45978-43498 70.4 1.1e-19 1
AL591688_0043 CDS_51039-49252 69.4 2.1e-19 1
AL591688_1458 CDS_1568272-1569420 55.3 2.1e-15 1
AL591688_1023 CDS_1114616-1116013 49.6 8.5e-14 1
AL591688_0553 CDS_614978-611472 49.4 9.4e-14 1
AL591688_1460 CDS_1571105-1573366 48.0 2.4e-13 1
AL591688_0066 CDS_74805-73504 45.5 1.3e-12 1
AL591688_2338 CDS_2525904-2527286 36.6 4.2e-10 1
AL591688_1802 CDS_1954664-1952055 29.6 3.9e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AL591688_1025 1/1 546 615 .. 1 87 [] 100.3 3.6e-28
AL591688_1882 1/1 261 330 .. 1 87 [] 94.8 1.3e-26
AL591688_1002 1/1 239 308 .. 1 87 [] 90.4 2.3e-25
AL591688_0392 1/1 214 279 .. 1 87 [] 83.8 1.7e-23
AL591688_0508 1/1 198 265 .. 1 87 [] 83.3 2.3e-23
AL591688_0721 1/1 902 971 .. 1 87 [] 72.7 2.3e-20
AL591688_0038 1/1 597 665 .. 1 87 [] 70.4 1.1e-19
AL591688_0043 1/1 358 423 .. 1 87 [] 69.4 2.1e-19
AL591688_1458 1/1 140 204 .. 1 87 [] 55.3 2.1e-15
AL591688_1023 1/1 240 305 .. 1 87 [] 49.6 8.5e-14
AL591688_0553 1/1 800 865 .. 1 87 [] 49.4 9.4e-14
AL591688_1460 1/1 503 575 .. 1 87 [] 48.0 2.4e-13
AL591688_0066 1/1 209 275 .. 1 87 [] 45.5 1.3e-12
AL591688_2338 1/1 257 315 .. 1 87 [] 36.6 4.2e-10
AL591688_1802 1/1 479 545 .. 1 87 [] 29.6 3.9e-08

Alignments of top-scoring domains:
AL591688_1025: domain 1 of 1, from 546 to 615: score 100.3, E = 3.6e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHELRTPL+aI+g++e+L+++++ ++l++e+
AL591688_1 546 AKSEFLANMSHELRTPLNAILGFSEILQDQMF------GPLGSEK-- 584

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey + i +++++ll+ ind+Ld+s+ieag
AL591688_1 585 ---------YHEYSRDIFESGKHLLNVINDILDMSKIEAG 615

AL591688_1882: domain 1 of 1, from 261 to 330: score 94.8, E = 1.3e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTPL+aI+g++e++ +e+ ++ls ++
AL591688_1 261 AKSRFLASMSHELRTPLNAILGFSEVMSTEV------LGPLSNPT-- 299

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey+ i+r++e+ll+Lin++Ldlsrieag
AL591688_1 300 ---------YKEYTLDIHRSGEHLLNLINEILDLSRIEAG 330

AL591688_1002: domain 1 of 1, from 239 to 308: score 90.4, E = 2.3e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla++sHELRTPL+aI+g++++L e++ ++l + +
AL591688_1 239 AKTRFLAAVSHELRTPLNAILGFSDVLAGEYF------GKLENDRQ- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey++ i++++ +ll+ +n +Ld+s+ieag
AL591688_1 279 ----------REYVSLIHQSGTHLLSVVNTMLDMSKIEAG 308

AL591688_0392: domain 1 of 1, from 214 to 279: score 83.8, E = 1.7e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks++la++sHE+RTPL++I+g++ lL e t lseeq
AL591688_0 214 AKSRLLATVSHEIRTPLSGILGMSRLLAE---------TRLSEEQ-- 249

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl ++++++ l +L++dl d+s + g
AL591688_0 250 ----------KNYLAGMQQSGHTLVQLVEDLIDFSSLAVG 279

AL591688_0508: domain 1 of 1, from 198 to 265: score 83.3, E = 2.3e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f+an+sHELRTPL+++rg++e+L+ +++++ +++
AL591688_0 198 MRSDFVANASHELRTPLASLRGFIETLQG---------PARDDRKAQ 235

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ ++++++ r++rL++dlL lsr+e
AL591688_0 236 ----------EKFFGIMHEQVTRMSRLVDDLLSLSRLELK 265

AL591688_0721: domain 1 of 1, from 902 to 971: score 72.7, E = 2.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla +sHE+RTPL+aI+g+++++ + ++ + +
AL591688_0 902 HKTEFLARVSHEIRTPLNAIIGFSDMMAS------EHFGPIGHPR-- 940

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ey i r++++ l+++ndlLd+s+ieag
AL591688_0 941 ---------YIEYAGDIGRSGRHVLDIVNDLLDISKIEAG 971

AL591688_0038: domain 1 of 1, from 597 to 665: score 70.4, E = 1.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+ ++s ELR PLt I+g+a+lL++ ++ +el+e q
AL591688_0 597 LKNDFVHHVSYELRSPLTNIIGFADLLKTPVF------GELNERQ-- 635

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey++ i ++ ll ++nd+Ldl+ +ag
AL591688_0 636 ----------AEYVDHIATSSSLLLTIVNDILDLATVDAG 665

AL591688_0043: domain 1 of 1, from 358 to 423: score 69.4, E = 2.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+a++sHEL++PLt++r ++e+L +++ee +
AL591688_0 358 AIENFAADVSHELKNPLTSLRSAVETLPL----------ARNEESK- 393

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++i+++++rl+rLi+d+ d sr++a+
AL591688_0 394 ----------KRLMDVIQHDVRRLDRLISDISDASRLDAE 423

AL591688_1458: domain 1 of 1, from 140 to 204: score 55.3, E = 2.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++++l+HE+++PL++Irg+a+lL++ ++e+
AL591688_1 140 SVTGLASMLAHEIKNPLSGIRGAAQLLET----------SVNDED-- 174

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++ i +e++r+ +L++++ +s +
AL591688_1 175 ----------RSLTRLICDETDRIVSLVDRMEVFSDERPV 204

AL591688_1023: domain 1 of 1, from 240 to 305: score 49.6, E = 8.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + n++H+L+TPLt +r ae++l+ ++ ++ q
AL591688_1 240 GLKQVSDNIAHDLKTPLTRLRNKAEAALA---------DTEGSNQ-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+le i+ e+++l r n lL +sr eag
AL591688_1 276 ----------SGALEQIIAESDQLIRTFNALLMISRVEAG 305

AL591688_0553: domain 1 of 1, from 800 to 865: score 49.4, E = 9.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+a++ H++ +PL+a r+y++ L e l++ ++
AL591688_0 800 GKTRFFAAAGHDILQPLNAARLYSSSLVE----------RLGDSDN- 835

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++ i++++e+ ++++ +Ld+sr+++g
AL591688_0 836 ----------RALVQNIDSSLESVEAILGAVLDISRLDTG 865

AL591688_1460: domain 1 of 1, from 503 to 575: score 48.0, E = 2.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++HE+++PLt I++ ae L++++ ++ ++ + +
AL591688_1 503 AWADVARRIAHEIKNPLTPIQLSAERLKRRY----GKQIDQEDRAV- 544

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +eti r++e + r+++++ ++r+ +
AL591688_1 545 ---------FDQCTETIVRQVEDIGRMVDEFSAFARMPKP 575

AL591688_0066: domain 1 of 1, from 209 to 275: score 45.5, E = 1.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++HEL TPL++I+ a+ +++ el+++ r
AL591688_0 209 QLDGLAAAAAHELGTPLATISVVAKEMER----------ELGDDPR- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e ++ +++++er+++++++l +ls ++
AL591688_0 245 ---------FGEDVHLLRSQSERCRDILRRLTTLSSESEE 275

AL591688_2338: domain 1 of 1, from 257 to 315: score 36.6, E = 4.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +l ++sH+LRT Lt ++ + l +
AL591688_2 257 QRTAMLTGVSHDLRTILTRFKLQLALVGN------------------ 285

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le++ +++e ++++++ L ++r +a+
AL591688_2 286 ----------NPDLESLNQDVEDMQNMLEGYLAFARGDAE 315

AL591688_1802: domain 1 of 1, from 479 to 545: score 29.6, E = 3.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ +++H++++ LtaI++ a+ Ll ++++++ +
AL591688_1 479 AVGTLAGGIAHDFNNVLTAILLSADHLLL---------SARPADAT- 515

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l i+r a+r L+++lL +sr ++
AL591688_1 516 ----------FADLMEIKRNANRAAVLVRQLLAFSRKQTM 545


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-14 3 0|=
-13 25 2|*==
-12 138 76|======*======
-11 318 396|============================= *
-10 568 734|==================================================== *
-9 642 758|==========================================================*
-8 559 568|===================================================*
-7 454 358|================================*=========
-6 302 206|==================*=========
-5 142 113|==========*==
-4 83 60|=====*==
-3 43 31|==*=
-2 22 16|=*
-1 12 8|*=
0 8 4|*
1 2 2|*
2 1 1|*
> 3 19 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 213.9675
P(chi-square) = 1.763e-309

Total sequences searched: 3341

Whole sequence top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: