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3 accessions found for Sinorhizobium meliloti 1021  

Data for AL591985  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AL591985.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AL591985_0342 CDS_364660-367413 95.5 3.8e-27 1
AL591985_1521 CDS_1622168-1625548 78.4 2.8e-22 1
AL591985_0164 CDS_181977-184220 54.5 1.6e-15 1
AL591985_1428 CDS_1527171-1525774 44.7 9.7e-13 1
AL591985_0344 CDS_367812-369374 44.3 1.2e-12 2
AL591985_1524 CDS_1628134-1629999 41.7 7e-12 1
AL591985_1000 CDS_1101556-1100294 41.6 7.4e-12 1
AL591985_0866 CDS_953680-951860 34.0 1.1e-09 1
AL591985_1162 CDS_1272317-1276006 29.2 2.4e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AL591985_0342 1/1 420 488 .. 1 87 [] 95.5 3.8e-27
AL591985_1521 1/1 676 742 .. 1 87 [] 78.4 2.8e-22
AL591985_0164 1/1 384 449 .. 1 87 [] 54.5 1.6e-15
AL591985_1428 1/1 245 310 .. 1 87 [] 44.7 9.7e-13
AL591985_0344 2/2 84 146 .. 7 87 .] 44.3 1.3e-12
AL591985_1524 1/1 405 473 .. 1 87 [] 41.7 7e-12
AL591985_1000 1/1 209 270 .. 1 87 [] 41.6 7.4e-12
AL591985_0866 1/1 379 447 .. 1 87 [] 34.0 1.1e-09
AL591985_1162 1/1 1006 1076 .. 1 87 [] 29.2 2.4e-08

Alignments of top-scoring domains:
AL591985_0342: domain 1 of 1, from 420 to 488: score 95.5, E = 3.8e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTPL+aI+gy+e+L ee+ + +e++
AL591985_0 420 AKSRFLASMSHELRTPLNAIIGYSEMLIEEA-------RDHEDEEL- 458

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i +++++ll+Lind+Ldls+iea+
AL591985_0 459 ----------VPDLDKIASAGRHLLSLINDILDLSKIEAN 488

AL591985_1521: domain 1 of 1, from 676 to 742: score 78.4, E = 2.8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ + +lsHELRTPL+a++gya++L++ d++ +++
AL591985_1 676 AKSRYVVGLSHELRTPLNAVLGYAQILER--------DETIPPPR-- 712

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ i+r+a++l+ Li+ lLd+s+ieag
AL591985_1 713 ----------QGAIKAIRRSADHLSGLIDGLLDISKIEAG 742

AL591985_0164: domain 1 of 1, from 384 to 449: score 54.5, E = 1.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+L +P++a ++y+++L + + +
AL591985_0 384 SKTRFLAAASHDLLQPINAAKLYLSMLTD---------KVGQPGT-- 419

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +++++r+ ++++L++ lLd+sr+++
AL591985_0 420 ----------EEVVRRLKRSFTSIESLLQALLDISRLDSS 449

AL591985_1428: domain 1 of 1, from 245 to 310: score 44.7, E = 9.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+ n+sH+LRTPL+ Ir+ + l+++ + + e++
AL591985_1 245 ALRHFTGNASHQLRTPLAIIRTQLALAQR----------ATTIEET- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + ++++++ +r++ +lL +++i+a
AL591985_1 281 ----------RAAAMKADEAVANAERILAQLLLMAKIDAA 310

AL591985_0344: domain 2 of 2, from 84 to 146: score 44.3, E = 1.3e-12
*->anlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeLRle
a l+H+LRTPL+aI+gy+e++lee+ ++++e +
AL591985_0 84 ARLRHDLRTPLNAIIGYSEMILEEA-------SDAPEHAL------- 116

dpeyreyletilreaerllrLindlLdlsrieag<-*
+e l++il++a ll +++ + lsr e+
AL591985_0 117 ----KEDLHVILSAAAELLTQVDAIASLSRGETV 146

AL591985_1524: domain 1 of 1, from 405 to 473: score 41.7, E = 7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +a+++HE+++P+++Ir+ya+ ++++l + ++
AL591985_1 405 ILGQVAAGVAHEINQPVATIRAYADNARTFL-------HRGQTVTA- 443

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e e+i + +er ++ ++l+ ++r ++
AL591985_1 444 ----------AENMESIAELTERVGAITDELRRFARKGHF 473

AL591985_1000: domain 1 of 1, from 209 to 270: score 41.6, E = 7.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + +lan+sHELR PL+ +r++++l + ++ ++ +
AL591985_1 209 SHRALLANASHELRSPLARLRMAIDLYEQ---------APNDDRK-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i+r + l+ Li+++L sr+++
AL591985_1 245 --------------QEIIRNLSELDTLIEEILLASRLDHV 270

AL591985_0866: domain 1 of 1, from 379 to 447: score 34.0, E = 1.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ a+lsHE+++PL+a ++ya+ + +++ +++e
AL591985_0 379 GLGQMSAALSHEFNQPLAAAKTYADSAAL------LIERGRTAEA-- 417

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++i ++r+ ++ + l+ ++r ++
AL591985_0 418 ----------SDNIRRISGLIDRMASISRHLRNFARKPNE 447

AL591985_1162: domain 1 of 1, from 1006 to 1076: score 29.2, E = 2.4e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ e+ a+++HE ++PL+aI ++++++ ++l + ++ + e +
AL591985_1 1006 SLAELSASIAHEVNQPLAAIVANSHACYRWL-----SADPVNIERA- 1046

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +e+++r+a++ + +++++ l + +
AL591985_1 1047 ----------KITTERVIRDAKSAADVVSRIRALFKQSVE 1076


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-15 1 0|=
-14 6 0|=
-13 16 1|*==
-12 55 35|=====*====
-11 138 186|======================= *
-10 256 345|=========================================== *
-9 305 356|=================================================== *
-8 282 266|============================================*==
-7 219 168|===========================*=========
-6 134 96|===============*=======
-5 74 53|========*====
-4 33 28|====*=
-3 15 15|==*
-2 11 7|=*
-1 7 4|*=
0 4 2|*
1 1 1|*
> 2 13 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 93.7794
P(chi-square) = 9.506e-16

Total sequences searched: 1570

Whole sequence top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: