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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

3 accessions found for Sinorhizobium meliloti 1021  

Data for AL591985  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: AL591985.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AL591985_0077 CDS_85081-86745 58.5 2.3e-17 1
AL591985_0449 CDS_479716-481539 52.2 1.7e-15 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AL591985_0077 1/1 360 424 .. 1 70 [] 58.5 2.3e-17
AL591985_0449 1/1 403 468 .. 1 70 [] 52.2 1.7e-15

Alignments of top-scoring domains:
AL591985_0077: domain 1 of 1, from 360 to 424: score 58.5, E = 2.3e-17
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
R R+AR+LHDsv Q+L+a++l+l l+ + p+ a+++l+e+
AL591985_0 360 GRMRLARDLHDSVLQNLTAARLKLKLIGEGI-----PDGAKTQLTEV 401

relarealaevRrllgdLRpaal<-*
l+ e ++ vR + + Rp+++
AL591985_0 402 GSLILEQQQCVRKFVDENRPGEE 424

AL591985_0449: domain 1 of 1, from 403 to 468: score 52.2, E = 1.7e-15
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe..eareald
ER I R++HD+v Q+L++ +lql+++ ++ e +e++e+l
AL591985_0 403 ERVKIGRDIHDGVLQALAGTSLQLQTL------RSSREyhEIDERLM 443

eirelarealaevRrllgdLRpaal<-*
+i+++++e ++++R+l+++L p+
AL591985_0 444 AIQAMLSEEQTDLRALIRRLEPGSG 468


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-15 1 0|=
-14 4 0|=
-13 13 0|===
-12 35 17|===*===
-11 45 143|========= *
-10 199 333|======================================== *
-9 279 379|======================================================== *
-8 267 292|====================================================== *
-7 201 183|====================================*====
-6 172 103|====================*==============
-5 155 55|==========*====================
-4 76 29|=====*==========
-3 47 14|==*=======
-2 34 7|=*=====
-1 24 3|*====
0 7 1|*=
1 2 1|*
2 2 0|=
3 2 0|=
4 0 0|
5 1 0|=
> 6 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 625.9902
P(chi-square) = 0

Total sequences searched: 1570

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: