Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

3 accessions found for Streptomyces coelicolor A3(2)  

Data for AL645882  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: AL645882.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AL645882_5224 CDS_5700131-5701606 105.9 1.2e-29 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AL645882_5224 1/1 293 362 .. 1 76 [. 105.9 1.2e-29

Alignments of top-scoring domains:
AL645882_5224: domain 1 of 1, from 293 to 362: score 105.9, E = 1.2e-29
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ++++LLrLQar++++ +eaL+E+++RV S
AL645882_5 293 EIHHRVKNNLQTVAALLRLQARRIESDRG-----REALEEAVRRVGS 334

mAliHEeLYksedldtvdfseYlekLten<-*
+A++HE L+++ d ++v+f+e +++++
AL645882_5 335 IAIVHETLSQNLD-ERVEFDEIADRVLAM 362


Histogram of all scores:
score obs exp (one = represents 40 sequences)
----- --- ---
-15 12 0|=
-14 59 0|==
-13 174 48|=*===
-12 581 510|============*==
-11 2313 1420|===================================*======================
-10 1717 1838|=========================================== *
-9 1070 1552|=========================== *
-8 871 1041|====================== *
-7 397 618|========== *
-6 305 344|========*
-5 112 185|=== *
-4 69 98|==*
-3 43 51|=*
-2 21 26|*
-1 16 14|*
0 3 7|*
1 1 3|*
2 1 1|*
3 2 1|*
> 4 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 1204.3102
P(chi-square) = 0

Total sequences searched: 7825

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: