Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
76 projects found  

2 accessions found for Ralstonia solanacearum GMI1000  

Data for AL646052  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AL646052.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AL646052_1536 CDS_1638718-1640049 88.4 8.6e-25 1
AL646052_3077 CDS_3315237-3318221 75.4 4.4e-21 1
AL646052_3384 CDS_3646636-3649449 75.0 5.7e-21 1
AL646052_2806 CDS_3023229-3021181 72.3 3.1e-20 1
AL646052_1261 CDS_1338984-1340069 64.9 4e-18 1
AL646052_0549 CDS_595209-593668 61.6 3.4e-17 1
AL646052_3402 CDS_3681053-3679713 59.0 1.9e-16 1
AL646052_2454 CDS_2664054-2662138 55.9 1.5e-15 1
AL646052_1734 CDS_1858357-1856942 55.0 2.6e-15 1
AL646052_3061 CDS_3302686-3301385 53.0 9.6e-15 1
AL646052_2934 CDS_3167052-3168554 50.2 6e-14 1
AL646052_0077 CDS_87475-89910 48.6 1.7e-13 1
AL646052_1647 CDS_1771912-1770551 48.2 2.2e-13 1
AL646052_2735 CDS_2946168-2947292 46.0 9.4e-13 1
AL646052_2734 CDS_2944831-2946159 32.7 5.3e-09 1
AL646052_1598 CDS_1716993-1714420 29.7 3.8e-08 1
AL646052_0331 CDS_362536-364533 27.6 1.5e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AL646052_1536 1/1 206 272 .. 1 87 [] 88.4 8.6e-25
AL646052_3077 1/1 375 440 .. 1 87 [] 75.4 4.4e-21
AL646052_3384 1/1 703 770 .. 1 87 [] 75.0 5.7e-21
AL646052_2806 1/1 427 501 .. 1 87 [] 72.3 3.1e-20
AL646052_1261 1/1 137 202 .. 1 87 [] 64.9 4e-18
AL646052_0549 1/1 278 343 .. 1 87 [] 61.6 3.4e-17
AL646052_3402 1/1 226 291 .. 1 87 [] 59.0 1.9e-16
AL646052_2454 1/1 261 326 .. 1 87 [] 55.9 1.5e-15
AL646052_1734 1/1 241 306 .. 1 87 [] 55.0 2.6e-15
AL646052_3061 1/1 207 272 .. 1 87 [] 53.0 9.6e-15
AL646052_2934 1/1 247 312 .. 1 87 [] 50.2 6e-14
AL646052_0077 1/1 569 641 .. 1 87 [] 48.6 1.7e-13
AL646052_1647 1/1 240 299 .. 1 87 [] 48.2 2.2e-13
AL646052_2735 1/1 141 214 .. 1 87 [] 46.0 9.4e-13
AL646052_2734 1/1 220 288 .. 1 87 [] 32.7 5.3e-09
AL646052_1598 1/1 628 698 .. 1 87 [] 29.7 3.8e-08
AL646052_0331 1/1 432 495 .. 1 82 [. 27.6 1.5e-07

Alignments of top-scoring domains:
AL646052_1536: domain 1 of 1, from 206 to 272: score 88.4, E = 8.6e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHEL+TPLt+++g++e+ ++ +lse+++
AL646052_1 206 MRRDFVANVSHELKTPLTVLSGFLETVRD---------LPLSEDDK- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl+ ++ +a r+++L++dlL l+ +e +
AL646052_1 243 ----------RRYLDMMHVQATRMQHLVEDLLALATLEGN 272

AL646052_3077: domain 1 of 1, from 375 to 440: score 75.4, E = 4.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla++sHE+RTP+++++g++elLl t l eq
AL646052_3 375 AKDRFLATMSHEIRTPMNGVLGLVELLLQ---------TRLEREQ-- 410

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++++++ ll+ ++d+Ld+++iea
AL646052_3 411 ----------QRMMTLVQESSRALLHVLDDILDYAKIEAD 440

AL646052_3384: domain 1 of 1, from 703 to 770: score 75.0, E = 5.7e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la++sH+LRTPLt++ g+ae+Ll+ + ++ls+ q
AL646052_3 703 LRNSLLAAVSHDLRTPLTGLAGMAETLLRTQ-------PPLSPLQ-- 740

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ e i ++a+r+++++ +lLd++r+++
AL646052_3 741 ----------AEAAEAIGEQAQRMRAMVTNLLDMARLQNH 770

AL646052_2806: domain 1 of 1, from 427 to 501: score 72.3, E = 3.1e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+++H++R+PL+aI+ +aelL + + + e ++
AL646052_2 427 SMGRLVASVAHQIRNPLAAISQAAELLDD---------PGEGGEPVR 464

peLR..ledpeyreyletilreaerllrLindlLdlsrieag<-*
pe+R+ + ++l++i++ ++rl++ + d+L lsr g
AL646052_2 465 PEGRgvE-----TRLLRIIRDNVRRLDQVVADVLMLSRRPRG 501

AL646052_1261: domain 1 of 1, from 137 to 202: score 64.9, E = 4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a e+++nl+HE+++PL +Irg+a+lL+ el+e +
AL646052_1 137 ANKELIRNLAHEIKNPLGGIRGAAQLLEF----------ELPERAL- 172

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey+++i++e++rl+ L+++lL+ r +
AL646052_1 173 ----------REYTQVIIKESDRLQTLVDRLLEPHRHPHI 202

AL646052_0549: domain 1 of 1, from 278 to 343: score 61.6, E = 3.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a+++H+++TPL+++r+ ael+++ e+s++++
AL646052_0 278 TQKRFIADAAHQMKTPLAGLRMQAELAQR----------EQSPDEL- 313

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l i +++er +L+ +lL l+r+e+
AL646052_0 314 ----------RRTLAHIADSSERTAHLVKQLLSLARMENM 343

AL646052_3402: domain 1 of 1, from 226 to 291: score 59.0, E = 1.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ +f+a+++HELRTPLta+++ ae L e +++s+
AL646052_3 226 AQHRFVADAAHELRTPLTALSLQAERLGE---------APMSAAA-- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l +++ +er ++L+++lL+l+r++a
AL646052_3 262 ----------QERLAALRQGIERSRALLEQLLTLARAQAD 291

AL646052_2454: domain 1 of 1, from 261 to 326: score 55.9, E = 1.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++sH+LR+P++a+ +++e+L++ ++se
AL646052_2 261 EKSRFLAAASHDLRQPVHALVLLVEALRA---------RNQSESL-- 296

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++e + + a+ ++ L + lLdls++e+
AL646052_2 297 ----------APLVEQLASGAQTIDLLFRSLLDLSKLESR 326

AL646052_1734: domain 1 of 1, from 241 to 306: score 55.0, E = 2.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ +f+a+++H+L+TPL++I++ +el+l+ e + +
AL646052_1 241 ARKRFFADAAHQLKTPLAVIQAQSELALR----------EPDGNRI- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l +++ +++ + +++lL lsr+e
AL646052_1 277 ----------RRHLAPLHDTVRQAAKGVQQLLSLSRLEPD 306

AL646052_3061: domain 1 of 1, from 207 to 272: score 53.0, E = 9.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++ ++sHEL+TP++ + + + lL+ + +e+qr
AL646052_3 207 HQREMMNGISHELKTPIARLEFGIALLQS----------PVPEDQR- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ++++++ l++L+ +lL lsr+e+g
AL646052_3 243 ----------KARFDALRSDVRELDELVTELLALSRLEQG 272

AL646052_2934: domain 1 of 1, from 247 to 312: score 50.2, E = 6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+s+fla++sH+LRTPL+++++ ae +l+ e ++ +
AL646052_2 247 AQSQFLADASHQLRTPLAVLLTQAEYALR----------ETDPVRV- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l i+ +++ +rL ++lL l+r+++
AL646052_2 283 ----------REGLAAIIARLQSTNRLTSQLLALARARHA 312

AL646052_0077: domain 1 of 1, from 569 to 641: score 48.6, E = 1.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae L+++l +++ t++++e +
AL646052_0 569 AWGEVARRLAHEIKNPLTPIQLSAERLEMKL---SPKLTDADAEVL- 611

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ ti +++ + r+++d++d++r
AL646052_0 612 ----------RRGATTIVNQVAAMKRMVDDFRDYARTPPA 641

AL646052_1647: domain 1 of 1, from 240 to 299: score 48.2, E = 2.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la++sH+LRTPLt +r+ +e+ ++ ++++
AL646052_1 240 DRAVMLAGISHDLRTPLTRLRLETEM------------SPVDDQT-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + ++e+++++i ++Ld++r +
AL646052_1 273 -------------RELMVADIEQMDAIIGQFLDYARPSGE 299

AL646052_2735: domain 1 of 1, from 141 to 214: score 46.0, E = 9.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e la l+HEL+TPL+aI +a +++++d te ++++
AL646052_2 141 AIDETLAFLAHELNTPLAAIANFARGIRMRVD-----QTEPAPDTL- 181

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
p++ ++ +++++ a+++l+ ++ +L r +g
AL646052_2 182 -------PGIGRAADRVQDNARYCLSVLSTFLNSVRHAHG 214

AL646052_2734: domain 1 of 1, from 220 to 288: score 32.7, E = 5.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + + a+l HE+++P++ ++++ +++e++ t++ ++ +
AL646052_2 220 AIGTLSAGLLHEINNPVNFCLMAIAVAQEDS-------TAKASPML- 258

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l +++ +r +++++dl +++ +
AL646052_2 259 ----------LECLADAKEGMQRVQHIVSDLKTFAYRSPE 288

AL646052_1598: domain 1 of 1, from 628 to 698: score 29.7, E = 3.8e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++l+HEL++PL+aI y+ + +l +++ ++e+++
AL646052_1 628 TMGEMASSLAHELNQPLAAINNYCMGAVGRL-----KSGRSTPEELI 669

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
p le+ +a r +i++++ + + ++
AL646052_1 670 PV-----------LEKTSAQAVRAGTIIQRIRGFVKRSQP 698

AL646052_0331: domain 1 of 1, from 432 to 495: score 27.6, E = 1.5e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a++ HEL++PL+a+r++++ + l + +
AL646052_0 432 ALGQMAAGITHELNQPLAALRTFSDNTRILL-------ERGQHGAA- 470

peLRledpeyreyletilreaerllrLindlLdls<-*
++ l+ i + +er+ ++ +l ++
AL646052_0 471 ----------ADNLRAIADLTERMGKITAQLKLFA 495


Histogram of all scores:
score obs exp (one = represents 12 sequences)
----- --- ---
-15 1 0|=
-14 9 0|=
-13 42 2|*===
-12 143 78|======*=====
-11 314 407|=========================== *
-10 565 756|================================================ *
-9 670 781|======================================================== *
-8 591 585|================================================*=
-7 465 368|==============================*========
-6 266 212|=================*=====
-5 163 116|=========*====
-4 97 62|=====*===
-3 46 32|==*=
-2 28 17|=*=
-1 9 9|*
0 8 4|*
> 1 24 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 227.4336
P(chi-square) = 2.756e-312

Total sequences searched: 3441

Whole sequence top hits:
tophits_s report:
Total hits: 17
Satisfying E cutoff: 17
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 17
Satisfying E cutoff: 17
Total memory: 27K


Acknowledgements:

This research is funded by:

Developed by: