Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
76 projects found  

2 accessions found for Ralstonia solanacearum GMI1000  

Data for AL646053  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AL646053.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AL646053_1623 CDS_2045264-2041968 74.1 4.8e-21 1
AL646053_1179 CDS_1484243-1486273 69.2 1.2e-19 1
AL646053_0488 CDS_611148-609751 67.5 3.6e-19 1
AL646053_1455 CDS_1829415-1828318 65.1 1.8e-18 1
AL646053_1163 CDS_1463076-1461538 63.1 6.5e-18 1
AL646053_1044 CDS_1320929-1322329 60.2 4.2e-17 1
AL646053_1554 CDS_1954619-1953303 59.6 6.4e-17 1
AL646053_0655 CDS_833516-832116 59.4 6.9e-17 1
AL646053_1442 CDS_1810044-1811699 58.9 9.6e-17 1
AL646053_1677 CDS_2090866-2088476 58.0 1.8e-16 1
AL646053_1196 CDS_1518202-1516907 52.6 6.1e-15 1
AL646053_0315 CDS_413159-414241 50.3 2.8e-14 1
AL646053_0524 CDS_654615-656093 38.8 4.9e-11 1
AL646053_0008 CDS_9390-11294 27.7 6.6e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AL646053_1623 1/1 514 579 .. 1 87 [] 74.1 4.8e-21
AL646053_1179 1/1 298 364 .. 1 87 [] 69.2 1.2e-19
AL646053_0488 1/1 246 312 .. 1 87 [] 67.5 3.6e-19
AL646053_1455 1/1 123 186 .. 1 87 [] 65.1 1.8e-18
AL646053_1163 1/1 277 341 .. 1 87 [] 63.1 6.5e-18
AL646053_1044 1/1 243 309 .. 1 87 [] 60.2 4.2e-17
AL646053_1554 1/1 215 280 .. 1 87 [] 59.6 6.4e-17
AL646053_0655 1/1 238 304 .. 1 87 [] 59.4 6.9e-17
AL646053_1442 1/1 313 380 .. 1 87 [] 58.9 9.6e-17
AL646053_1677 1/1 417 484 .. 1 87 [] 58.0 1.8e-16
AL646053_1196 1/1 220 278 .. 1 87 [] 52.6 6.1e-15
AL646053_0315 1/1 134 198 .. 1 87 [] 50.3 2.8e-14
AL646053_0524 1/1 244 309 .. 1 87 [] 38.8 4.9e-11
AL646053_0008 1/1 405 473 .. 1 87 [] 27.7 6.6e-08

Alignments of top-scoring domains:
AL646053_1623: domain 1 of 1, from 514 to 579: score 74.1, E = 4.8e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla + HE+RTPL++ +g++elL + ++ls eq
AL646053_1 514 AKSMFLAIVGHEIRTPLHGAMGHLELLAR---------SALSLEQ-- 549

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re ++ r+ + ll L+ndlLd +++ea+
AL646053_1 550 ----------REWVDMTSRSFDALLTLVNDLLDSTKLEAN 579

AL646053_1179: domain 1 of 1, from 298 to 364: score 69.2, E = 1.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fla++sHELRTPL+a++g a+lL + + +e
AL646053_1 298 LKDDFLATVSHELRTPLNAVLGWAQLLAM---------RPYDEAM-- 333

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+r+ le i+r+a+ +Li+dlLd+s i +g
AL646053_1 334 ---------FRRGLEAIERSARTQVHLIDDLLDMSAILSG 364

AL646053_0488: domain 1 of 1, from 246 to 312: score 67.5, E = 3.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f a+l+H++RTPL+ ++g +e+ l+ +++++ +
AL646053_0 246 RLSQFSADLAHDFRTPLANLIGQTEVTLA---------HPRPAGE-- 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr le+ l+e rl+r+i+d+L l+r+++
AL646053_0 282 ---------YRAVLESSLEEYARLSRMIEDMLFLARADHA 312

AL646053_1455: domain 1 of 1, from 123 to 186: score 65.1, E = 1.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ ++sHELR PL+ I++++ l++ +++s + +
AL646053_1 123 QHRQLFHDVSHELRSPLARIQAAVGLMQQ---------SPQSGPVM- 159

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+i reaerl+rLi++lL+l ++eag
AL646053_1 160 -------------AERIAREAERLDRLIEELLTLHKLEAG 186

AL646053_1163: domain 1 of 1, from 277 to 341: score 63.1, E = 6.5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a++sHELRTPL+++rg +e+L++++ +l++
AL646053_1 277 MRRQLTADISHELRTPLAVLRGELEALEDGV-------RALTPAS-- 314

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l +++ e+ l++Li+dl +ls ++ g
AL646053_1 315 -------------LTSLQAEVGTLSKLIDDLYELSLADVG 341

AL646053_1044: domain 1 of 1, from 243 to 309: score 60.2, E = 4.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+a++sHELR PL+ +r+ +e+ l+ e+s e+
AL646053_1 243 AQRHFTADASHELRSPLSRLRTEIEITLR---------RERSRED-- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y e l++ l+e+ rl L+++lL l+r++ag
AL646053_1 279 ---------YVETLRSCLEEVARLTLLVEELLMLARLDAG 309

AL646053_1554: domain 1 of 1, from 215 to 280: score 59.6, E = 6.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+a+++H LRTPL+a+++ ++++ + ++se++r
AL646053_1 215 HQRAFVADAAHALRTPLAALKLQLQVADR----------AQSEDER- 250

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + ++r +er+ rL+ +lL+l+r e g
AL646053_1 251 ----------RAAHADLHRGVERMIRLVGQLLTLARQEPG 280

AL646053_0655: domain 1 of 1, from 238 to 304: score 59.4, E = 6.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f +++HE+RTP+t +++ +e+ l +++ +
AL646053_0 238 RLSDFSTDIAHEIRTPITNLLTQTEVVLS---------QPREGAK-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr+ l + +e++rl r+++d+L l+++e+
AL646053_0 274 ---------YRDVLTSNAEELQRLARMVSDMLYLAKMEHS 304

AL646053_1442: domain 1 of 1, from 313 to 380: score 58.9, E = 9.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+l HELRTP taIrg ae++l++ +++++ +
AL646053_1 313 RRRQLFADLGHELRTPTTAIRGEAEIALRG--------GDKPAHE-- 349

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr +le+i a++l indlL ++++ea
AL646053_1 350 ---------YRMALERIVGGAKQLTGRINDLLLIAKAEAD 380

AL646053_1677: domain 1 of 1, from 417 to 484: score 58.0, E = 1.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++fla +sHELR PL++I+ a +L+++l +e s +
AL646053_1 417 ARDQFLAVVSHELRSPLNGIQSWAYVLENQL-------AEGSQPV-- 454

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l i+ + + rLi+dlLd +r +g
AL646053_1 455 ----------QRALAGIRTGVAQQVRLIEDLLDATRVMSG 484

AL646053_1196: domain 1 of 1, from 220 to 278: score 52.6, E = 6.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la+++H+L+TPL+ +r+ ae+L +
AL646053_1 220 ERNTMLAGIAHDLKTPLSRLRLRAEMLTD------------------ 248

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i+r++++++++++++L +++ + g
AL646053_1 249 ----------PKASAGIERDVDSMSAIVDQFLAYAQSGDG 278

AL646053_0315: domain 1 of 1, from 134 to 198: score 50.3, E = 2.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + a+++HELRTP+t +rg ++ L e + ++++
AL646053_0 134 EQVFWNAAIAHELRTPVTILRGRLQGLAE---------GVFTPDE-- 169

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++l ++e+l rLi+dl+ s +e+g
AL646053_0 170 -----------PQFRSLLTQVESLTRLIEDLRVVSLAESG 198

AL646053_0524: domain 1 of 1, from 244 to 309: score 38.8, E = 4.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a+++HELRTPL+aI++ a + se++r
AL646053_0 244 ADRRFFADAAHELRTPLAAIQAQAYVVSH----------SDSEDDR- 279

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+ +r + r + ++ lL l+r++a
AL646053_0 280 ----------STALREFDRGISRATQSLSKLLALARLDAR 309

AL646053_0008: domain 1 of 1, from 405 to 473: score 27.7, E = 6.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++a++ HEL++PLta+ ++++ + la+++ +e
AL646053_0 405 VLGQMAAGITHELNQPLTALTTLSDNANQ-----LAERGRVDEVR-- 444

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l i + a+r+ r+++ + ++r +
AL646053_0 445 -----------GNLAHISQLAHRMGRIVSHIKGFARKGDA 473


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-14 3 0|=
-13 24 1|*====
-12 66 38|=======*======
-11 169 199|================================== *
-10 261 369|===================================================== *
-9 293 381|==========================================================*
-8 284 285|========================================================*
-7 232 179|===================================*===========
-6 138 103|====================*=======
-5 78 56|===========*====
-4 56 30|=====*======
-3 19 16|===*
-2 23 8|=*===
-1 9 4|*=
0 3 2|*
1 4 1|*
> 2 17 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 158.3825
P(chi-square) = 6.989e-29

Total sequences searched: 1679

Whole sequence top hits:
tophits_s report:
Total hits: 14
Satisfying E cutoff: 14
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 14
Satisfying E cutoff: 14
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: