Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
76 projects found  

2 accessions found for Ralstonia solanacearum GMI1000  

Data for AL646053  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: AL646053.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AL646053_0980 CDS_1233824-1235737 62.3 1.9e-18 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AL646053_0980 1/1 432 500 .. 1 70 [] 62.3 1.9e-18

Alignments of top-scoring domains:
AL646053_0980: domain 1 of 1, from 432 to 500: score 62.3, E = 1.9e-18
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe.earealde
ER+ A+ LHDs++Q+L ++lq++++ +++ ++++ +eare++
AL646053_0 432 ERNLVAQGLHDSIAQGLNFLNLQVQMLDTAV--QDENLtEARETVPL 476

irelarealaevRrllgdLRpaal<-*
+r ++e++++vR+ll ++R +
AL646053_0 477 LRCGVEECYQDVRELLLNFRSKLE 500


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-14 3 0|=
-13 26 0|======
-12 35 18|===*===
-11 67 153|============== *
-10 166 357|================================== *
-9 264 405|===================================================== *
-8 214 312|=========================================== *
-7 237 196|=======================================*========
-6 200 111|======================*=================
-5 182 59|===========*=========================
-4 106 31|======*===============
-3 68 16|===*==========
-2 44 8|=*=======
-1 20 4|*===
0 16 2|*===
1 10 1|*=
2 9 0|==
3 4 0|=
4 2 0|=
5 1 0|=
6 2 0|=
7 1 0|=
> 8 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1081.8008
P(chi-square) = 0

Total sequences searched: 1679

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: