Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
76 projects found  

1 accessions found for Nitrosomonas europaea ATCC 19718  

Data for AL954747  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AL954747.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AL954747_1288 CDS_1409076-1407718 81.5 5.9e-23 1
AL954747_0049 CDS_60731-64420 80.1 1.5e-22 1
AL954747_0515 CDS_554551-553115 62.6 1.4e-17 1
AL954747_0015 CDS_18115-19614 59.7 9e-17 1
AL954747_2082 CDS_2264806-2263571 59.5 1e-16 1
AL954747_0343 CDS_383768-382383 52.2 1.2e-14 1
AL954747_1974 CDS_2130981-2133110 50.5 3.6e-14 1
AL954747_0728 CDS_789105-787849 48.8 1.1e-13 1
AL954747_0666 CDS_722767-721379 32.2 5.4e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AL954747_1288 1/1 206 273 .. 1 87 [] 81.5 5.9e-23
AL954747_0049 1/1 564 629 .. 1 87 [] 80.1 1.5e-22
AL954747_0515 1/1 255 319 .. 1 87 [] 62.6 1.4e-17
AL954747_0015 1/1 269 337 .. 1 87 [] 59.7 9e-17
AL954747_2082 1/1 179 245 .. 1 87 [] 59.5 1e-16
AL954747_0343 1/1 238 303 .. 1 87 [] 52.2 1.2e-14
AL954747_1974 1/1 472 544 .. 1 87 [] 50.5 3.6e-14
AL954747_0728 1/1 209 275 .. 1 87 [] 48.8 1.1e-13
AL954747_0666 1/1 232 298 .. 1 87 [] 32.2 5.4e-09

Alignments of top-scoring domains:
AL954747_1288: domain 1 of 1, from 206 to 273: score 81.5, E = 5.9e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHELRTPLt+I g++e+Lle + + s e
AL954747_1 206 MRRDFVANVSHELRTPLTVIGGFLETLLE--------ENKISGEME- 243

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ + ++a r++rL++dlL+lsr+e+
AL954747_1 244 ----------KNALRLMSDQAIRMRRLVEDLLTLSRLENA 273

AL954747_0049: domain 1 of 1, from 564 to 629: score 80.1, E = 1.5e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP+++++g++++L t ls+ q
AL954747_0 564 AKSAFLAAMSHEIRTPMNGVIGMIDVLSQ---------TSLSSYQ-- 599

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++ i+++a ll++i+d+Ld+s+ieag
AL954747_0 600 ----------KEMTDLIRESAFVLLEIIEDILDFSKIEAG 629

AL954747_0515: domain 1 of 1, from 255 to 319: score 62.6, E = 1.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a++sHELRTPL+++rg +e++l+++ ++l++
AL954747_0 255 SRRRWVADISHELRTPLAVLRGELEAILDGV-------HPLTPAA-- 292

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++ ++ rl+rL +dl +l+ ++g
AL954747_0 293 -------------IESLSGDVLRLNRLTEDLYQLALSDQG 319

AL954747_0015: domain 1 of 1, from 269 to 337: score 59.7, E = 9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +f++++sHEL+TPLtaIr a+lL e ++ ++l+ +q
AL954747_0 269 QKMQFFRHISHELKTPLTAIREGADLLAE------GITGNLNRKQ-- 307

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +++ ++ +l++ i+dlL +s ++a+
AL954747_0 308 ----------QLIAGILHTSSMQLQKRIEDLLNFSALQAE 337

AL954747_2082: domain 1 of 1, from 179 to 245: score 59.5, E = 1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a+l+H+LRTPL++ ++ya L ++l++++r
AL954747_2 179 AMGEMAAGLAHQLRTPLSTALLYAGHLSG---------EALDPQER- 215

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++++ +++l++Li+++L++ + e
AL954747_2 216 ----------KRFAVKAIERLHHLEHLIRNMLQFVKGEPV 245

AL954747_0343: domain 1 of 1, from 238 to 303: score 52.2, E = 1.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++fla+++H+LRTPL+++++ +el +e+ +++e
AL954747_0 238 AQQRFLADAAHQLRTPLAGLQTQIELVAAEGK------YVRNDER-- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l +i+++aer+ +L+ +lL +++ e
AL954747_0 277 -------------LARIEEAAERIAHLVTQLLIYAQTEPA 303

AL954747_1974: domain 1 of 1, from 472 to 544: score 50.5, E = 3.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae L+ +l ++l+e+++
AL954747_1 472 AWGEVARRLAHEIKNPLTPIQLSAERLQHKL------VSKLDEPDAK 512

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +eti +++e l r++n++++++r +
AL954747_1 513 IL--------KRSTETIVSQVEALKRMVNEFREYARVPEL 544

AL954747_0728: domain 1 of 1, from 209 to 275: score 48.8, E = 1.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f++++sHELRTPL+++ +ae++l+ + s+ +
AL954747_0 209 RERKFIRMASHELRTPLAVVVSTAEVALD---------PLVSPHST- 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++il a+ +++L+ lL l+r a
AL954747_0 246 ----------EAHLRRILATAHEMQNLVTLLLALARDPAR 275

AL954747_0666: domain 1 of 1, from 232 to 298: score 32.2, E = 5.4e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + +++H+L TPL ++ +el+l+ + ++ ++
AL954747_0 232 NLKQISTDIAHDLLTPLGRLQQQLELALT---------DCRNTQD-- 267

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr +e+++ a +++L + lL +s ie+
AL954747_0 268 ---------YRHTIERAIATAVEIQQLFSSLLKISEIESL 298


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 5 0|=
-13 17 1|*==
-12 95 56|======*=====
-11 255 291|================================ *
-10 422 541|===================================================== *
-9 460 558|==========================================================*
-8 420 418|====================================================*
-7 293 263|================================*====
-6 199 151|==================*======
-5 116 83|==========*====
-4 59 44|=====*==
-3 36 23|==*==
-2 34 12|=*===
-1 16 6|*=
0 11 3|*=
1 4 1|*
2 3 0|=
3 2 0|=
> 4 14 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 169.2920
P(chi-square) = 1.65e-30

Total sequences searched: 2574

Whole sequence top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: