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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

5 accessions found for Xanthomonas campestris pv. vesicatoria str. 85-10  

Data for AM039952  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AM039952.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM039952_1919 CDS_2168768-2170948 95.2 1.3e-26 1
AM039952_2671 CDS_3011890-3015984 91.9 1.1e-25 1
AM039952_1332 CDS_1498481-1495275 90.0 4.1e-25 1
AM039952_3166 CDS_3594176-3590574 87.6 2e-24 1
AM039952_3165 CDS_3590221-3586637 86.5 3.9e-24 1
AM039952_3167 CDS_3597881-3594348 86.4 4.2e-24 1
AM039952_3168 CDS_3601752-3598177 84.1 1.9e-23 1
AM039952_0528 CDS_595348-593039 83.4 3.1e-23 1
AM039952_1071 CDS_1203971-1202643 80.7 1.7e-22 1
AM039952_1323 CDS_1484044-1484919 78.0 9.9e-22 1
AM039952_0934 CDS_1063366-1061456 76.0 3.7e-21 1
AM039952_3364 CDS_3853643-3852309 75.6 4.7e-21 1
AM039952_3350 CDS_3835068-3836681 72.0 5.2e-20 1
AM039952_3793 CDS_4378672-4380420 66.2 2.2e-18 1
AM039952_4069 CDS_4666436-4667620 66.0 2.6e-18 1
AM039952_2215 CDS_2548412-2544999 63.8 1e-17 1
AM039952_0811 CDS_924808-927468 63.7 1.1e-17 1
AM039952_4292 CDS_4929186-4925737 63.6 1.2e-17 1
AM039952_3804 CDS_4391362-4389326 62.0 3.5e-17 1
AM039952_0888 CDS_1018762-1020126 58.3 3.8e-16 1
AM039952_0335 CDS_383626-382247 56.1 1.6e-15 1
AM039952_1329 CDS_1493876-1492746 54.4 4.9e-15 1
AM039952_0191 CDS_227828-228883 54.3 5.1e-15 1
AM039952_3014 CDS_3428809-3427361 53.3 9.9e-15 1
AM039952_3601 CDS_4140494-4143205 52.6 1.6e-14 1
AM039952_2965 CDS_3371003-3372148 52.1 2.2e-14 1
AM039952_3610 CDS_4152236-4150851 50.4 6.6e-14 1
AM039952_2310 CDS_2643379-2644737 49.1 1.6e-13 1
AM039952_0744 CDS_847745-849556 48.1 2.9e-13 1
AM039952_1254 CDS_1414376-1415665 47.6 4.1e-13 1
AM039952_2105 CDS_2411526-2410450 42.7 1e-11 1
AM039952_1705 CDS_1922338-1925193 41.7 2e-11 1
AM039952_0231 CDS_271434-272876 41.5 2.2e-11 1
AM039952_1708 CDS_1927453-1929525 35.6 1.1e-09 1
AM039952_4386 CDS_5048890-5050023 31.4 1.6e-08 1
AM039952_0783 CDS_897461-895959 30.6 2.7e-08 1
AM039952_1333 CDS_1498607-1499770 29.5 5.6e-08 1
AM039952_2754 CDS_3135674-3134052 28.1 1.4e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM039952_1919 1/1 188 253 .. 1 87 [] 95.2 1.3e-26
AM039952_2671 1/1 643 708 .. 1 87 [] 91.9 1.1e-25
AM039952_1332 1/1 376 444 .. 1 87 [] 90.0 4.1e-25
AM039952_3166 1/1 834 899 .. 1 87 [] 87.6 2e-24
AM039952_3165 1/1 823 888 .. 1 87 [] 86.5 3.9e-24
AM039952_3167 1/1 809 874 .. 1 87 [] 86.4 4.2e-24
AM039952_3168 1/1 810 875 .. 1 87 [] 84.1 1.9e-23
AM039952_0528 1/1 110 175 .. 1 87 [] 83.4 3.1e-23
AM039952_1071 1/1 209 273 .. 1 87 [] 80.7 1.7e-22
AM039952_1323 1/1 57 125 .. 1 87 [] 78.0 9.9e-22
AM039952_0934 1/1 275 340 .. 1 87 [] 76.0 3.7e-21
AM039952_3364 1/1 235 301 .. 1 87 [] 75.6 4.7e-21
AM039952_3350 1/1 315 381 .. 1 87 [] 72.0 5.2e-20
AM039952_3793 1/1 209 274 .. 1 87 [] 66.2 2.2e-18
AM039952_4069 1/1 166 231 .. 1 87 [] 66.0 2.6e-18
AM039952_2215 1/1 748 814 .. 1 87 [] 63.8 1e-17
AM039952_0811 1/1 652 720 .. 1 87 [] 63.7 1.1e-17
AM039952_4292 1/1 783 849 .. 1 87 [] 63.6 1.2e-17
AM039952_3804 1/1 298 364 .. 1 87 [] 62.0 3.5e-17
AM039952_0888 1/1 244 310 .. 1 87 [] 58.3 3.8e-16
AM039952_0335 1/1 236 300 .. 1 87 [] 56.1 1.6e-15
AM039952_1329 1/1 158 224 .. 1 87 [] 54.4 4.9e-15
AM039952_0191 1/1 122 181 .. 1 79 [. 54.3 5.1e-15
AM039952_3014 1/1 258 323 .. 1 87 [] 53.3 9.9e-15
AM039952_3601 1/1 516 581 .. 1 87 [] 52.6 1.6e-14
AM039952_2965 1/1 160 224 .. 1 87 [] 52.1 2.2e-14
AM039952_3610 1/1 242 307 .. 1 87 [] 50.4 6.6e-14
AM039952_2310 1/1 224 288 .. 1 87 [] 49.1 1.6e-13
AM039952_0744 1/1 368 436 .. 1 87 [] 48.1 2.9e-13
AM039952_1254 1/1 212 278 .. 1 87 [] 47.6 4.1e-13
AM039952_2105 1/1 131 201 .. 1 87 [] 42.7 1e-11
AM039952_1705 1/1 575 643 .. 1 87 [] 41.7 2e-11
AM039952_0231 1/1 268 334 .. 1 87 [] 41.5 2.2e-11
AM039952_1708 1/1 316 384 .. 1 87 [] 35.6 1.1e-09
AM039952_4386 1/1 145 210 .. 1 87 [] 31.4 1.6e-08
AM039952_0783 1/1 292 349 .. 1 87 [] 30.6 2.7e-08
AM039952_1333 1/1 155 221 .. 1 87 [] 29.5 5.6e-08
AM039952_2754 1/1 160 230 .. 1 87 [] 28.1 1.4e-07

Alignments of top-scoring domains:
AM039952_1919: domain 1 of 1, from 188 to 253: score 95.2, E = 1.3e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTPL++++g++e+L + t l++eq
AM039952_1 188 AKSRFLANMSHEFRTPLNGLSGMTEVLAT---------TRLDAEQ-- 223

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+ti+ +a++ll+L++++Ld+s ieag
AM039952_1 224 ----------KECLNTIQASARSLLSLVEEVLDISAIEAG 253

AM039952_2671: domain 1 of 1, from 643 to 708: score 91.9, E = 1.1e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+flan+sHE+RTP++aI+g++ lL++ +el+
AM039952_2 643 SKSDFLANMSHEIRTPMNAILGMLYLLQR---------SELPGAA-- 678

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ +i+r+a+ ll++ind+Ld+s+ieag
AM039952_2 679 ----------QDMVAKIDRSARTLLEIINDILDFSKIEAG 708

AM039952_1332: domain 1 of 1, from 376 to 444: score 90.0, E = 4.1e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++ + +a+lL + +d++ls+eq
AM039952_1 376 YKSEFLANMSHELRTPLNSALILAKLLAD------NKDGTLSAEQ-- 414

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y + il++ + ll+Lind+Ldls+ieag
AM039952_1 415 ----------VKYAQAILSSNNDLLALINDILDLSKIEAG 444

AM039952_3166: domain 1 of 1, from 834 to 899: score 87.6, E = 2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla+l HE RTP+t+++g++elLl+ t l+ +q
AM039952_3 834 AKTRFLATLGHEVRTPMTGVLGMSELLLK---------TSLDLKQ-- 869

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y+e+i+r++ +llrL+nd Ldl+rie+g
AM039952_3 870 ----------RSYTESIRRAGAHLLRLVNDALDLARIESG 899

AM039952_3165: domain 1 of 1, from 823 to 888: score 86.5, E = 3.9e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla+l HE RTP+t+++g++elLl+ t++++ q
AM039952_3 823 AKTRFLATLGHEVRTPMTGVLGMSELLLK---------TTQDATQ-- 858

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y+e+i+r++ +llrL+nd Ldl+rie+g
AM039952_3 859 ----------RSYTESIRRAGAHLLRLVNDALDLARIESG 888

AM039952_3167: domain 1 of 1, from 809 to 874: score 86.4, E = 4.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla+l HE RTP+t+++g++elLl+ t+l+++q
AM039952_3 809 AKSHFLATLGHEVRTPMTGVLGMSELLLA---------TPLNAKQ-- 844

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y++ i +++ +llrL+nd Ldl+rieag
AM039952_3 845 ----------RGYVDAICKAGTHLLRLVNDALDLARIEAG 874

AM039952_3168: domain 1 of 1, from 810 to 875: score 84.1, E = 1.9e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla+l HE RTP+t+++g++elLl t+l+ q
AM039952_3 810 AKTRFLATLGHEVRTPMTGVLGMSELLLQ---------TPLDGRQ-- 845

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y + i+ ++++llrL+nd Ldl+rieag
AM039952_3 846 ----------QGYASAIQLAGKHLLRLVNDALDLARIEAG 875

AM039952_0528: domain 1 of 1, from 110 to 175: score 83.4, E = 3.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+efla++sHE+RTPL++I+ ++el+ + ls +q
AM039952_0 110 AKGEFLATMSHEIRTPLNGIIPMLELISS---------GQLSVDQ-- 145

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l+t+ ++ +llr+++d+Ld+s++ea+
AM039952_0 146 ----------RDMLQTATGSSLQLLRIVDDILDYSKLEAN 175

AM039952_1071: domain 1 of 1, from 209 to 273: score 80.7, E = 1.7e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHELRTPLt++ gy+++L ++ ++
AM039952_1 209 VRRDFVANVSHELRTPLTVVHGYLDMLDP---------EDFPDSG-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l ++++++r+ +L++dlL+lsr+e++
AM039952_1 245 -----------PMLAEMRKQSQRMAQLVEDLLTLSRLESQ 273

AM039952_1323: domain 1 of 1, from 57 to 125: score 78.0, E = 9.9e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+fl+++sHE+RTPL +I+ + lL++++d ++l++eq
AM039952_1 57 LKSRFLSYMSHEFRTPLGSILSITRLLEDGMD------GPLNAEQ-- 95

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ + +a+ l ++++dlLdl++ieag
AM039952_1 96 ----------LKQVRFVSGSARELTEMVDDLLDLAKIEAG 125

AM039952_0934: domain 1 of 1, from 275 to 340: score 76.0, E = 3.7e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+efl+ sHELRTPL+aI+gya++L++ +l+e+ +
AM039952_0 275 AKTEFLSRSSHELRTPLNAILGYAQVLEM----------DLPEPGH- 310

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ il ++++ll Li +lLd++riea
AM039952_0 311 ----------RRHLQHILGAGRHLLGLITELLDIARIEAD 340

AM039952_3364: domain 1 of 1, from 235 to 301: score 75.6, E = 4.7e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +ef a++sHELRTPL++Irg++elLl+ ++l+e+
AM039952_3 235 RDREFNADVSHELRTPLAVIRGATELLLT--------KPNLDEKV-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++i+r+ +++++Li lL lsr e g
AM039952_3 272 ----------LQRLQRIQRAEQQCSDLIGSLLLLSRNERG 301

AM039952_3350: domain 1 of 1, from 315 to 381: score 72.0, E = 5.2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f a+l+HE+R+PL+aI+ +++lL+e +++ ++ +
AM039952_3 315 AMGRFSASLAHEIRNPLAAISYASQLLEE--------SPDIGDAD-- 351

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l++i+++ +r + +++ +L l+r e
AM039952_3 352 ----------RRLLQIIHQQCQRTNGIVESVLALARRERA 381

AM039952_3793: domain 1 of 1, from 209 to 274: score 66.2, E = 2.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+s+f++++sHELRTPL+a++ a+l+++ + ++++q
AM039952_3 209 AQSRFISTMSHELRTPLNAVINCAQLIET---------EQMPAQQ-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l+++ a l++ +n++Ld + i+ g
AM039952_3 245 ----------RELLHSVTVNATALRHRVNEVLDVASIDGG 274

AM039952_4069: domain 1 of 1, from 166 to 231: score 66.0, E = 2.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a+++HELRTPL+a+ +yae++l+ + ++e +
AM039952_4 166 AERDFVADAAHELRTPLSALHAYAEVALR----------ASTPEAK- 201

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l +l+ a+r +rL ++lLdl+r++ag
AM039952_4 202 ----------DAALGQLLETARRSNRLAEQLLDLARLDAG 231

AM039952_2215: domain 1 of 1, from 748 to 814: score 63.8, E = 1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla+lsHELRTPL+aI+g + l++ + +++ +
AM039952_2 748 VKDEFLATLSHELRTPLNAILGWSRLMQS---------DIADPANL- 784

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l +i+r+a+ ++i+dlLd+s i +g
AM039952_2 785 ----------GRGLVIIERSARAQTQIIDDLLDMSAILSG 814

AM039952_0811: domain 1 of 1, from 652 to 720: score 63.7, E = 1.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +l+++sH+LR PL++++g a+ L ++ +++++ +r
AM039952_0 652 LRSALLSSVSHDLRSPLASMIGSASSLASYG-------DAMDAHDR- 690

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ti+ e+erl+r i++lLd++r+++
AM039952_0 691 ----------HSLLDTIQLEGERLDRYIQNLLDMTRLGHT 720

AM039952_4292: domain 1 of 1, from 783 to 849: score 63.6, E = 1.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+ +PL+a r++a++L+e ++++ e++
AM039952_4 783 SKTRFLAAISHDVLQPLNAARLFASALRE---------SHQNNEEQ- 819

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + e+++ +++ ++L++ lLd sr++ag
AM039952_4 820 ----------RHLAERVDASLRAAEELLDGLLDVSRLDAG 849

AM039952_3804: domain 1 of 1, from 298 to 364: score 62.0, E = 3.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla+lsHELRTPLt+I+g +elLl +++ + ++ +
AM039952_3 298 LKDEFLATLSHELRTPLTTILGWSELLLQRVE------EGQPYYKG- 337

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i ++a+ rLi+d+Ldls + g
AM039952_3 338 -------------LSVIASSARAQKRLISDMLDLSSMLLG 364

AM039952_0888: domain 1 of 1, from 244 to 310: score 58.3, E = 3.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f++++sHELRTPLt+Ir +++++l+ d+els+ +
AM039952_0 244 RERNFTRDASHELRTPLTVIRVASDMALA--------DDELSART-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l++i+r+++ +++ i+ +L l+r +
AM039952_0 281 ----------QRSLRRIQRAGHDMEAVIDAFLILAREAEI 310

AM039952_0335: domain 1 of 1, from 236 to 300: score 56.1, E = 1.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a++sHELRTPL+++r+ +e+L+++ ++++
AM039952_0 236 ARRDFMADISHELRTPLAVLRAELEALQDGI-------RPMTPIS-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l ++++++ +l +Li+dl d s + g
AM039952_0 274 -------------LGSLHQQVGQLGKLIEDLYDVSLTDVG 300

AM039952_1329: domain 1 of 1, from 158 to 224: score 54.4, E = 4.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a l H+LRTPL++I++ a+ L ++ ++++
AM039952_1 158 LNETMMAVLTHDLRTPLSVILLCADKLGLDV--------DADSSA-- 194

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le ++++a+r++r++++lLd+sr+++
AM039952_1 195 ----------ARTLEHLENSAHRMSRMVEQLLDFSRLRTD 224

AM039952_0191: domain 1 of 1, from 122 to 181: score 54.3, E = 5.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+s l +l+HELR+PL++++g+a+lL +++ + ++e++
AM039952_0 122 ALSAALKGLAHELRNPLAGLKGAAQLLARRA-------AGRDEDE-- 159

peLRledpeyreyletilreaerllrLindlL<-*
re++e i e+erl+ L+++lL
AM039952_0 160 ----------RELIELIGTEIERLNTLLERLL 181

AM039952_3014: domain 1 of 1, from 258 to 323: score 53.3, E = 9.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l HE++ PL+aIrg++elL e +l+e +r
AM039952_3 258 YVEQYVQSLTHEMKSPLAAIRGASELLTE----------PLPEADR- 293

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ti+ + +rl + i+ lL l+ e+
AM039952_3 294 ----------QHFVATIRAQEHRLTETIDKLLALAEVEQH 323

AM039952_3601: domain 1 of 1, from 516 to 581: score 52.6, E = 1.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+a++ H+L +PL+a r+++++L+ + + +
AM039952_3 516 YKTRFVASAVHDLLQPLNAARMFVSVLRG---------QVREAGS-- 551

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ i+ ++ ++++n lLd+sr+eag
AM039952_3 552 ----------ARVVDNIDGALAAQDAILNSLLDISRLEAG 581

AM039952_2965: domain 1 of 1, from 160 to 224: score 52.1, E = 2.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ a+l+HELRTPL+a +g ++ +l++++ ++ +eq
AM039952_2 160 ELRDSSAMLAHELRTPLNAAMGRVQGMLDDVF-------PREPEQ-- 197

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ ++r++e+++rLi dl s ++ag
AM039952_2 198 -------------LRLVHRQLEQINRLIGDLHLVSLARAG 224

AM039952_3610: domain 1 of 1, from 242 to 307: score 50.4, E = 6.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+a ++H++RTPL+a+r+ a+l+ + ++ + e
AM039952_3 242 TLRAFMAEAAHQMRTPLAALRAQAQLAMD---------DDDPHEM-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l i+r a +++rL+n+lL + +
AM039952_3 278 ----------QRSLVAIERNASHMSRLLNQLLSDASVIHR 307

AM039952_2310: domain 1 of 1, from 224 to 288: score 49.1, E = 1.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ +++HELRTPLt+I +++++++ +e +e
AM039952_2 224 SQRAFTDAAAHELRTPLTVIDTHLQVARI---------SEGDEVA-- 259

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+++++ ++rl+r ++++++l+r+ea+
AM039952_2 260 -----------SSLSSAEEGVKRLRRTLDQMMTLARAEAP 288

AM039952_0744: domain 1 of 1, from 368 to 436: score 48.1, E = 2.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR PL + g+++ L + + +++ +e+
AM039952_0 368 ELEAFSYSVSHDLRAPLRHVAGFSDKLAR-------HLGDAADEKS- 406

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y e+i ++a+r+ +Li+dlL +sr++ g
AM039952_0 407 ----------RHYMEVISSSARRMASLIDDLLVYSRLGRG 436

AM039952_1254: domain 1 of 1, from 212 to 278: score 47.6, E = 4.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+ ++sHELRTP+++I ++el+le ++ +++ +
AM039952_1 212 RERAFIDSASHELRTPIAVIGNAVELALE---------QPGTPPAV- 248

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l++i + + + ++Li lL l++
AM039952_1 249 ----------RHQLQRIAQTSASVEQLITLLLVLAKDPGR 278

AM039952_2105: domain 1 of 1, from 131 to 201: score 42.7, E = 1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++HE ++PL+aI + +++++l ++ ++ ++
AM039952_2 131 SMGGLAASIAHEVNQPLAAIVTSGNACQRWL--------AQQPPNLA 169

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +le++l +a r +++i +++ l+r ea
AM039952_2 170 KA--------DAALERMLADAGRASAIIARMRALARGEAS 201

AM039952_1705: domain 1 of 1, from 575 to 643: score 41.7, E = 2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ LtaI+ +elL++ + e++ +rl
AM039952_1 575 AVGQLTGGLAHDFNNLLTAISVGLELLQT--------RIEQGKYDRL 613

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+e ++++a r +L ++lL +sr ++
AM039952_1 614 ----------ERYVEMAQSSAARATALTQRLLAFSRRQTL 643

AM039952_0231: domain 1 of 1, from 268 to 334: score 41.5, E = 2.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+++HE+R+P++++r+++e + + ++++++
AM039952_0 268 ALGRMTATVAHEIRNPIATMRLALENEIA--------RRDATPDD-- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e +l +++rl+ ++ lL + +
AM039952_0 305 ----------AAHGELMLGQIRRLDGVVESLLGMVQPIRL 334

AM039952_1708: domain 1 of 1, from 316 to 384: score 35.6, E = 1.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I+ +++l++ + d + ++e
AM039952_1 316 AVGQLTGGIAHDFNNMLTGILSALDLARLRID------QGRTEGL-- 354

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+++ +a r +L ++lL +sr ++
AM039952_1 355 ----------GRFLDVASASALRAAALTQRLLAFSRRQSL 384

AM039952_4386: domain 1 of 1, from 145 to 210: score 31.4, E = 1.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef+ l H+LR+PL ++ + +++L + l+
AM039952_4 145 LREEFIGILGHDLRNPLQSMHAVVDMLSI---------DQLDHRY-- 180

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++r+++r+++Li+ d++r +
AM039952_4 181 ----------GSSIRSLQRSLRRMEELIDFACDFARGIEL 210

AM039952_0783: domain 1 of 1, from 292 to 349: score 30.6, E = 2.7e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++H+LRTPL+ +++ ++ L+
AM039952_0 292 ERTHMVAAIAHDLRTPLARLSFRLDGLQP------------------ 320

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++l +++ + ++i+ Ld+ + +
AM039952_0 321 -----------PLRDKALADINEMKAMISAALDFIQNDRH 349

AM039952_1333: domain 1 of 1, from 155 to 221: score 29.5, E = 5.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H+++ Lt++ + ++l+ ++ + +
AM039952_1 155 ALGRLTLGMAHDFNSLLTVMVTSLDLIAL---------SAGEDART- 191

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++e+++ +++r L ++lL ++r ++
AM039952_1 192 ----------RMLIEVAQTAVDRGTLLTRQLLAFARGQQL 221

AM039952_2754: domain 1 of 1, from 160 to 230: score 28.1, E = 1.4e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ L +++g++e++++ a+ ++ ++e +
AM039952_2 160 ALGQLTGGIAHDFNNLLQVMSGHLEVIQM-----MASAGAGNAERI- 200

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e + +a L ++lL +sr +
AM039952_2 201 ----------AFSAEHAAAAAAKAATLTQQLLAFSRKQKL 230


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-15 1 0|=
-14 13 0|=
-13 47 3|*===
-12 180 102|======*=====
-11 392 531|=========================== *
-10 780 986|==================================================== *
-9 850 1018|========================================================= *
-8 785 762|==================================================*==
-7 572 480|===============================*=======
-6 341 276|==================*====
-5 203 151|==========*===
-4 127 81|=====*===
-3 64 42|==*==
-2 32 22|=*=
-1 26 11|*=
0 10 6|*
1 8 3|*
2 7 1|*
3 0 0|
4 0 0|
5 1 0|=
6 1 0|=
7 1 0|=
8 0 0|
9 0 0|
> 10 46 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 276.5498
P(chi-square) = 0

Total sequences searched: 4487

Whole sequence top hits:
tophits_s report:
Total hits: 38
Satisfying E cutoff: 38
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 38
Satisfying E cutoff: 38
Total memory: 36K


Acknowledgements:

This research is funded by:

Developed by: