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5 accessions found for Xanthomonas campestris pv. vesicatoria str. 85-10  

Data for AM039952  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: AM039952.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM039952_4087 CDS_4683436-4682165 88.9 7.1e-26 1
AM039952_1260 CDS_1419087-1420283 72.3 5.6e-21 1
AM039952_0114 CDS_130886-132115 64.2 1.4e-18 1
AM039952_2040 CDS_2323958-2321826 62.6 4.1e-18 1
AM039952_2188 CDS_2519053-2515754 50.8 1.2e-14 1
AM039952_2152 CDS_2471032-2474121 38.4 5.4e-11 1
AM039952_2155 CDS_2475710-2478727 38.1 6.8e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM039952_4087 1/1 223 290 .. 1 70 [] 88.9 7.1e-26
AM039952_1260 1/1 199 263 .. 1 70 [] 72.3 5.6e-21
AM039952_0114 1/1 224 289 .. 1 70 [] 64.2 1.4e-18
AM039952_2040 1/1 504 569 .. 1 70 [] 62.6 4.1e-18
AM039952_2188 1/1 875 942 .. 1 70 [] 50.8 1.2e-14
AM039952_2152 1/1 810 876 .. 1 70 [] 38.4 5.4e-11
AM039952_2155 1/1 796 862 .. 1 70 [] 38.1 6.8e-11

Alignments of top-scoring domains:
AM039952_4087: domain 1 of 1, from 223 to 290: score 88.9, E = 7.1e-26
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RI R+LHD +g++Ls+++l+++la+rl+ ++dp++ar ++d++
AM039952_4 223 ERERIGRDLHDLLGHTLSLVALKSDLAARLI--ERDPQAARNEIDAV 267

relarealaevRrllgdLRpaal<-*
++ +reala+vRr+++++R a+l
AM039952_4 268 AQVSREALAQVRRAVTGIRAAGL 290

AM039952_1260: domain 1 of 1, from 199 to 263: score 72.3, E = 5.6e-21
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RI+RELHD +g++L+a++l le+a +++ ++a+e+++++
AM039952_1 199 ERTRISRELHDLLGHHLTALSLNLEVAGHIT-----EGQAQEHVRQA 240

relarealaevRrllgdLRpaal<-*
++la+ l++vR+++++LR+++
AM039952_1 241 HTLAKLLLTDVREAVSHLRDSGA 263

AM039952_0114: domain 1 of 1, from 224 to 289: score 64.2, E = 1.4e-18
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER R+ARELHD+ g+ L+a+++ l l+ ++++ + r +++ +
AM039952_0 224 ERLRLARELHDVAGHKLTAMRINLRLLS-----ADPALAQRNEVAVV 265

relarealaevRrllgdLR.paal<-*
++l+ e l+++R++++ LR++++l
AM039952_0 266 EQLSAELLSDIRNVVQSLRdDQGL 289

AM039952_2040: domain 1 of 1, from 504 to 569: score 62.6, E = 4.1e-18
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+ I+R+LHD +gQ+++a+kl +++a+ d + d+++ re l e+
AM039952_2 504 ERRAISRDLHDDIGQAITAMKLSAHAAL---D-EPDADARREDLLEV 546

relarealaevRrllgdLRpaal<-*
la+++ + +R+l LRp++l
AM039952_2 547 VSLADTTVTKLRNLSMLLRPPQL 569

AM039952_2188: domain 1 of 1, from 875 to 942: score 50.8, E = 1.2e-14
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RIARELHD++ Q+ +++l l++a r l + ++ + r +l+++
AM039952_2 875 ERERIARELHDTLLQGTQGLILRLHAASRSL--PWND-PRRLELEQA 918

relarealaevRrllgdLR.paal<-*
+la+ alae R+ + +LR+ + l
AM039952_2 919 VDLAENALAEGRDRVNGLRdSQSL 942

AM039952_2152: domain 1 of 1, from 810 to 876: score 38.4, E = 5.4e-11
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RIAR+LHD+ Q+ +++l + a+ ++ d e+are ++ +
AM039952_2 810 ERERIARDLHDTFLQGVQGLMLRFQSAAERI---PDGERARELMEDA 853

relarealaevRrllgdLRpaal<-*
+ a++ la+ R+ + +LR+++
AM039952_2 854 LDRADRILADGRDKVAELRTSVC 876

AM039952_2155: domain 1 of 1, from 796 to 862: score 38.1, E = 6.8e-11
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe..eareald
ER+RIARELHD++ Q++ +++l ++a +k p +++ar a++
AM039952_2 796 ERERIARELHDTLLQGIQSLILRFQAAI-----EKLPVkePARIAME 837

eirelarealaevRrllgdLRpaal<-*
+ e a++ l+e R+ +++LR aa
AM039952_2 838 GALERADDVLSEGRDRVQGLRAAAA 862


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-14 5 0|=
-13 47 0|====
-12 108 50|===*=====
-11 162 411|============= *
-10 454 954|=================================== *
-9 716 1083|======================================================== *
-8 660 835|=================================================== *
-7 661 525|========================================*==========
-6 522 297|======================*==================
-5 489 159|============*=========================
-4 243 83|======*============
-3 152 42|===*========
-2 78 21|=*====
-1 80 11|*======
0 36 5|*==
1 26 2|*=
2 15 1|*=
3 8 0|=
4 10 0|=
5 4 0|=
6 1 0|=
7 2 0|=
> 8 8 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 2847.1143
P(chi-square) = 0

Total sequences searched: 4487

Whole sequence top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: