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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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2 accessions found for Brucella melitensis biovar Abortus 2308  

Data for AM040265  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AM040265.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM040265_0221 CDS_219189-217849 44.9 6.3e-13 1
AM040265_0763 CDS_754559-755983 35.9 2.2e-10 1
AM040265_0040 CDS_37370-38440 34.0 7.7e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM040265_0221 1/1 227 292 .. 1 87 [] 44.9 6.3e-13
AM040265_0763 1/1 264 322 .. 1 87 [] 35.9 2.2e-10
AM040265_0040 1/1 129 199 .. 1 87 [] 34.0 7.7e-10

Alignments of top-scoring domains:
AM040265_0221: domain 1 of 1, from 227 to 292: score 44.9, E = 6.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+an +HELRTP++a ++ ++ L + ++++
AM040265_0 227 AERSFTANSAHELRTPIAAALAQTQRLIA---------ETQDKAA-- 262

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ e i+ +++rl+rL + l++l+++e g
AM040265_0 263 ----------RDRGEQIEAALHRLSRLSEKLMQLAKAEGG 292

AM040265_0763: domain 1 of 1, from 264 to 322: score 35.9, E = 2.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+l+H+LRTPLt +++ elL +
AM040265_0 264 EREQLAAALAHDLRTPLTRMKLRMELLDD------------------ 292

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ r+++ ++++ + + d++ e
AM040265_0 293 ----------DALRQSLSRDLNDIEEISRSVIDFATSELA 322

AM040265_0040: domain 1 of 1, from 129 to 199: score 34.0, E = 7.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++++++HE +PL aI a++ +++l a++++ +e
AM040265_0 129 TLGQLTSSIAHEVSQPLVAIEISASAGRRWL----AQSPPNNERA-- 169

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++e+i +++r +++++++ lsr e +
AM040265_0 170 ----------AAAIERISADSHRAIEILDRVRRLSRGEKP 199


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-15 1 0|=
-14 6 0|==
-13 23 0|======
-12 61 23|=====*==========
-11 88 122|====================== *
-10 142 227|==================================== *
-9 224 234|======================================================== *
-8 166 175|========================================== *
-7 132 110|===========================*=====
-6 92 63|===============*=======
-5 34 34|========*
-4 27 18|====*==
-3 16 9|==*=
-2 10 5|=*=
-1 5 2|*=
0 1 1|*
1 1 0|=
2 1 0|=
> 3 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 130.4369
P(chi-square) = 3.804e-23

Total sequences searched: 1164

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: