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1 accessions found for uncultured methanogenic archaeon RC-I  

Data for AM114193  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AM114193.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM114193_2247 CDS_2279503-2281107 66.8 1.1e-18 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM114193_2247 1/1 307 370 .. 1 82 [. 66.8 1.1e-18

Alignments of top-scoring domains:
AM114193_2247: domain 1 of 1, from 307 to 370: score 66.8, E = 1.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k ef+ +sHELRTPLt+I+gyaelL++ + ++ ++eq
AM114193_2 307 MKMEFFTLISHELRTPLTTIKGYAELLKD------GTLGPVNDEQ-- 345

peLRledpeyreyletilreaerllrLindlLdls<-*
r+ l++i+ +++rl +++ l dls
AM114193_2 346 ----------RDRLSRIDASVDRLTGIVESLSDLS 370


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-15 1 0|=
-14 10 0|=
-13 65 2|*=====
-12 213 70|======*=============
-11 388 365|=================================*==
-10 618 678|========================================================= *
-9 557 700|=================================================== *
-8 468 524|=========================================== *
-7 309 330|=============================*
-6 188 190|=================*
-5 99 104|=========*
-4 57 55|====*=
-3 41 29|==*=
-2 29 15|=*=
-1 11 8|*
0 7 4|*
1 5 2|*
2 1 1|*
3 5 0|=
4 1 0|=
5 1 0|=
6 2 0|=
7 1 0|=
8 1 0|=
9 1 0|=
10 0 0|
11 1 0|=
12 1 0|=
13 0 0|
14 0 0|
15 1 0|=
16 1 0|=
17 0 0|
18 0 0|
> 19 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 349.2887
P(chi-square) = 0

Total sequences searched: 3085

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: