Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
76 projects found  

1 accessions found for Bordetella avium 197N  

Data for AM167904  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AM167904.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM167904_1775 CDS_1871147-1867719 89.3 4.8e-25 1
AM167904_3088 CDS_3363285-3364607 86.4 3.2e-24 1
AM167904_1872 CDS_1970064-1973724 79.0 3.9e-22 1
AM167904_2702 CDS_2927924-2930692 72.7 2.5e-20 1
AM167904_2308 CDS_2492798-2494183 72.5 2.9e-20 1
AM167904_1926 CDS_2027697-2026636 58.3 2.9e-16 1
AM167904_0100 CDS_101195-103633 53.0 9.6e-15 1
AM167904_2113 CDS_2264846-2263701 51.7 2.1e-14 1
AM167904_0230 CDS_236709-239006 51.1 3.2e-14 1
AM167904_0524 CDS_543432-544742 49.8 7.4e-14 1
AM167904_2904 CDS_3166369-3164873 45.2 1.5e-12 1
AM167904_2216 CDS_2382543-2384471 43.3 5.2e-12 1
AM167904_1657 CDS_1745392-1743638 39.8 5e-11 1
AM167904_2043 CDS_2192790-2191372 38.9 9.2e-11 1
AM167904_1061 CDS_1139114-1137672 36.7 3.8e-10 1
AM167904_2272 CDS_2453789-2456521 28.8 6.9e-08 1
AM167904_0016 CDS_23432-21129 27.1 2e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM167904_1775 1/1 513 578 .. 1 87 [] 89.3 4.8e-25
AM167904_3088 1/1 203 272 .. 1 87 [] 86.4 3.2e-24
AM167904_1872 1/1 721 787 .. 1 87 [] 79.0 3.9e-22
AM167904_2702 1/1 693 758 .. 1 87 [] 72.7 2.5e-20
AM167904_2308 1/1 226 291 .. 1 87 [] 72.5 2.9e-20
AM167904_1926 1/1 124 180 .. 1 78 [. 58.3 2.9e-16
AM167904_0100 1/1 226 291 .. 1 87 [] 53.0 9.6e-15
AM167904_2113 1/1 145 210 .. 1 87 [] 51.7 2.1e-14
AM167904_0230 1/1 509 581 .. 1 87 [] 51.1 3.2e-14
AM167904_0524 1/1 216 282 .. 1 87 [] 49.8 7.4e-14
AM167904_2904 1/1 250 315 .. 1 87 [] 45.2 1.5e-12
AM167904_2216 1/1 421 489 .. 1 87 [] 43.3 5.2e-12
AM167904_1657 1/1 351 421 .. 1 87 [] 39.8 5e-11
AM167904_2043 1/1 233 299 .. 1 87 [] 38.9 9.2e-11
AM167904_1061 1/1 254 313 .. 1 87 [] 36.7 3.8e-10
AM167904_2272 1/1 675 742 .. 1 87 [] 28.8 6.9e-08
AM167904_0016 1/1 544 609 .. 1 87 [] 27.1 2e-07

Alignments of top-scoring domains:
AM167904_1775: domain 1 of 1, from 513 to 578: score 89.3, E = 4.8e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL+aI g++elL ++l++ q
AM167904_1 513 AKSAFLAAMSHEIRTPLNAIHGNLELLSH---------SALDSAQ-- 548

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++ti++++++ll++++d+Ld+s+ieag
AM167904_1 549 ----------RAHVDTIRSASDSLLSIVSDVLDFSKIEAG 578

AM167904_3088: domain 1 of 1, from 203 to 272: score 86.4, E = 3.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHELRTPLt++ g++e+L + ++l+eeqr
AM167904_3 203 TRRDFVANVSHELRTPLTVLAGFLETLHD------MPPEALGEEQR- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl +l++a+r++++++dlL+ls +e+
AM167904_3 243 ----------SQYLAMMLEQAQRMQAIVEDLLTLSTLESS 272

AM167904_1872: domain 1 of 1, from 721 to 787: score 79.0, E = 3.9e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP++aI+g++el l+ +++ + +
AM167904_1 721 AKSTFLATMSHEIRTPMNAIIGMLELELR--------RPADQATD-- 757

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l++ +++a++ll+Li d+Ld+s+iea
AM167904_1 758 ----------RSALQITYDSARSLLDLIGDILDISKIEAD 787

AM167904_2702: domain 1 of 1, from 693 to 758: score 72.7, E = 2.5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la++sH+LRTPLt+++g++e+L + ++ ++
AM167904_2 693 LRNSLLAAVSHDLRTPLTGLIGMTETLAR---------SATDAAV-- 728

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + i+++a+r+ r++ +lLd++r++++
AM167904_2 729 ----------QEQANAIRDQARRMHRMVVNLLDMARLQSQ 758

AM167904_2308: domain 1 of 1, from 226 to 291: score 72.5, E = 2.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++H+L+TPL+++r+ ael+l+ ++s++++
AM167904_2 226 AQRRFVADAAHQLKTPLAGLRTQAELALR----------DASPDEM- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ + ++er rL+n+lL l+r+e++
AM167904_2 262 ----------QSSLRQLVASSERATRLVNQLLLLARAETP 291

AM167904_1926: domain 1 of 1, from 124 to 180: score 58.3, E = 2.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e+l+nl+HE ++PL ++rg+a+lL++ el++ +
AM167904_1 124 AHRELLRNLAHEVKNPLGGLRGAAQLLEA----------ELPSAAL- 159

peLRledpeyreyletilreaerllrLindl<-*
+ey+++i++ea+rl++L+++l
AM167904_1 160 ----------AEYTQVIISEADRLQALVDRL 180

AM167904_0100: domain 1 of 1, from 226 to 291: score 53.0, E = 9.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++H+ RTPL+++r+ ae++le e s+e +
AM167904_0 226 SLNTLVADAAHQVRTPLASLRAQAEVALE----------EPSPERL- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re + +i++ a + ++Lin+lL + i +
AM167904_0 262 ----------RERVARIHQNATQASQLINQLLMDATIAHR 291

AM167904_2113: domain 1 of 1, from 145 to 210: score 51.7, E = 2.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+ +++H+LRTPL+++r+ +el+l+ +l+e+
AM167904_2 145 AQRRFIGHAAHQLRTPLSGLRLESELMLA---------RPLPEDV-- 180

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r e+i+ ++r+ rL ++lL l++++ +
AM167904_2 181 ----------RARAERIKVVSDRMIRLGQQLLVLAKADPN 210

AM167904_0230: domain 1 of 1, from 509 to 581: score 51.1, E = 3.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae L ++l ++l++ + +
AM167904_0 509 AWGEVARRLAHEIKNPLTPIQLSAERLAMKLA------GHLPPAE-A 548

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+L +++++ti +++ +l ++++d+++++r
AM167904_0 549 QML-------ARATNTIVNQVGSLKQMVDDFREYARTPPA 581

AM167904_0524: domain 1 of 1, from 216 to 282: score 49.8, E = 7.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef+anlsHE RTPL++Ir +e++++ dt l++e
AM167904_0 216 RQREFAANLSHEVRTPLASIRSDSEMMQM--------DTRLPPEV-- 252

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l +i + ++++++ ++ + ++r e
AM167904_0 253 ----------QRRLTRIVDGVDSISSSLESARAMAREERC 282

AM167904_2904: domain 1 of 1, from 250 to 315: score 45.2, E = 1.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+fla++sH+LRTPL+ +++ a+ +l+ e+++ +
AM167904_2 250 EQSQFLADASHQLRTPLAIMLTQAQYALR----------ERDPARA- 285

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+ i +++ r +rL ++lL l+ + +
AM167904_2 286 ----------QEGLRAIVDQLGRTRRLTEQLLSLAHASQA 315

AM167904_2216: domain 1 of 1, from 421 to 489: score 43.3, E = 5.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +a+++HE+++PL+aIr+ya+ + ++l + + +
AM167904_2 421 LLGQVAAGVAHEINQPLSAIRAYADNAGTFL-------ERGDGSSA- 459

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ti + +er+ + +l+ +sr a
AM167904_2 460 ----------LKNLRTIAQLTERIGGITGELRAFSRKAAA 489

AM167904_1657: domain 1 of 1, from 351 to 421: score 39.8, E = 5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++l+HEL++PLtaI y+ + + + + +
AM167904_1 351 TMGEMASSLAHELNQPLTAIANYSMGAVA---------LVKAGHTSP 388

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++L +le++ +aer ++i++++++ + ++
AM167904_1 389 NML-------LPALEKAAAQAERAGKIISRIREFVKRSEP 421

AM167904_2043: domain 1 of 1, from 233 to 299: score 38.9, E = 9.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+ +l+HELRTPL+ ++g ++ ++ +
AM167904_2 233 RLSRYSEDLAHELRTPLSILMGQTQRTVQ---------RPREAAV-- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+e l + l+e erl+rLi+ +L l+r +a
AM167904_2 269 ---------YEEVLLSHLEEYERLNRLIDGMLFLARVRAC 299

AM167904_1061: domain 1 of 1, from 254 to 313: score 36.7, E = 3.8e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la++sH+LRTPL+ +r+ +e+ + +e+
AM167904_1 254 DRELMLAGISHDLRTPLARMRLEIEM------------SGVTEDA-- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i++++ ++++ i +l++++r
AM167904_1 287 -------------RQAIDDDLGQIDHSIGQLMEYARPAGT 313

AM167904_2272: domain 1 of 1, from 675 to 742: score 28.8, E = 6.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++ + lsHELRTP ++I+++++ L++ + + +ee
AM167904_2 675 SHRQLQSLLSHELRTPAATISAAVQSLET-------ILAGSGEEV-- 712

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l +i+r++ r+ ++++ +L +r + +
AM167904_2 713 ----------DSRLARIRRAVGRMIAMLDTMLSPERRGDQ 742

AM167904_0016: domain 1 of 1, from 544 to 609: score 27.1, E = 2e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e+l+ +sH++R P ++I++++ l ++ ++ s +q
AM167904_0 544 QREEMLRFISHDMRAPQNSILALVALHEK---------EAHSQDQ-- 579

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l++i + a r l+L++ + +l+r+e+
AM167904_0 580 ----------TETLQRIAQLATRTLHLVDGFVQLTRAESM 609


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-14 9 0|=
-13 42 2|*===
-12 113 77|======*====
-11 293 400|=========================== *
-10 528 743|================================================ *
-9 639 767|==========================================================*
-8 623 574|====================================================*====
-7 438 362|================================*=======
-6 270 208|==================*======
-5 177 114|==========*======
-4 99 61|=====*===
-3 65 32|==*===
-2 28 16|=*=
-1 15 8|*=
0 7 4|*
1 8 2|*
2 4 1|*
3 2 0|=
4 1 0|=
5 0 0|
> 6 20 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 269.6183
P(chi-square) = 0

Total sequences searched: 3423

Whole sequence top hits:
tophits_s report:
Total hits: 17
Satisfying E cutoff: 17
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 17
Satisfying E cutoff: 17
Total memory: 27K


Acknowledgements:

This research is funded by:

Developed by: