Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

1 accessions found for Francisella tularensis subsp. holarctica  

Data for AM233362  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AM233362.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM233362_1877 CDS_1811656-1810079 59.6 7.1e-17 1
AM233362_1761 CDS_1695821-1697248 57.0 3.9e-16 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM233362_1877 1/1 296 364 .. 1 87 [] 59.6 7.1e-17
AM233362_1761 1/1 249 314 .. 1 87 [] 57.0 3.9e-16

Alignments of top-scoring domains:
AM233362_1877: domain 1 of 1, from 296 to 364: score 59.6, E = 7.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +l+++sH+L+TPL++I+g+++ ++ + + ++eq+
AM233362_1 296 LQKSMLSSVSHDLKTPLASIMGALSSIKSYK-------DSFNPEQQ- 334

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l+ +l e++rl++ i+++ ++ + ++g
AM233362_1 335 ----------VEMLDLALTESKRLDSYIDNIIQMLKVDSG 364

AM233362_1761: domain 1 of 1, from 249 to 314: score 57.0, E = 3.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f +++HEL+TP++++++++e++l+ + +++
AM233362_1 249 REKRFSGDAAHELKTPIAGVKTLVEIALA----------SDDIDEI- 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le+i+++++r +++i++lL+lsri+ +
AM233362_1 285 ----------KQKLERIKSSTNRYSHIIDQLLTLSRIQPN 314


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-14 6 0|=
-13 38 1|*======
-12 93 40|======*=========
-11 222 207|==================================*==
-10 315 385|===================================================== *
-9 320 398|====================================================== *
-8 246 298|========================================= *
-7 214 187|===============================*====
-6 162 108|=================*=========
-5 60 59|=========*
-4 27 31|=====*
-3 20 16|==*=
-2 5 8|=*
-1 6 4|*
0 8 2|*=
1 6 1|*
2 3 0|=
> 3 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 141.6857
P(chi-square) = 1.902e-25

Total sequences searched: 1967

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: