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Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

7 accessions found for Rhizobium leguminosarum bv. viciae 3841  

Data for AM236080  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AM236080.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM236080_1453 CDS_1506726-1504417 98.6 1.5e-27 1
AM236080_3593 CDS_3775876-3772520 96.1 8e-27 1
AM236080_2781 CDS_2936240-2937775 93.6 4e-26 1
AM236080_1392 CDS_1443943-1445523 85.8 6.5e-24 1
AM236080_0413 CDS_450079-447827 85.6 7.8e-24 1
AM236080_0547 CDS_583856-585079 81.3 1.2e-22 1
AM236080_3746 CDS_3943413-3946799 77.5 1.5e-21 1
AM236080_0031 CDS_34182-31597 72.3 4.3e-20 1
AM236080_0776 CDS_831349-827417 70.8 1.2e-19 1
AM236080_0036 CDS_39019-37229 67.2 1.2e-18 1
AM236080_1009 CDS_1082248-1081109 64.1 9e-18 1
AM236080_1827 CDS_1910283-1908589 58.5 3.5e-16 1
AM236080_3426 CDS_3599547-3601415 52.6 1.7e-14 1
AM236080_0682 CDS_726629-724323 52.0 2.5e-14 1
AM236080_2261 CDS_2375639-2376793 50.1 8.6e-14 1
AM236080_1166 CDS_1234580-1233183 49.5 1.3e-13 1
AM236080_3120 CDS_3279155-3277524 48.6 2.3e-13 1
AM236080_2283 CDS_2398654-2400024 48.3 2.9e-13 1
AM236080_2286 CDS_2402293-2404563 45.8 1.4e-12 1
AM236080_0680 CDS_723906-722311 45.2 2.1e-12 1
AM236080_0607 CDS_650948-647427 45.1 2.2e-12 1
AM236080_1450 CDS_1499139-1500551 43.6 6.2e-12 1
AM236080_1886 CDS_1976372-1974453 42.6 1.1e-11 1
AM236080_0059 CDS_59560-58232 41.8 2e-11 1
AM236080_4110 CDS_4342919-4344301 39.0 1.2e-10 1
AM236080_0686 CDS_729507-728791 36.4 6.5e-10 1
AM236080_2733 CDS_2890473-2888311 35.9 8.9e-10 1
AM236080_3896 CDS_4123706-4121904 34.1 3e-09 1
AM236080_3454 CDS_3627974-3626598 31.0 2.2e-08 1
AM236080_1651 CDS_1715645-1717291 30.9 2.4e-08 1
AM236080_2740 CDS_2897407-2896103 30.7 2.7e-08 1
AM236080_2974 CDS_3141169-3139808 30.3 3.5e-08 1
AM236080_4199 CDS_4451062-4449686 27.8 1.8e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM236080_1453 1/1 543 612 .. 1 87 [] 98.6 1.5e-27
AM236080_3593 1/1 583 648 .. 1 87 [] 96.1 8e-27
AM236080_2781 1/1 261 330 .. 1 87 [] 93.6 4e-26
AM236080_1392 1/1 254 323 .. 1 87 [] 85.8 6.5e-24
AM236080_0413 1/1 233 298 .. 1 87 [] 85.6 7.8e-24
AM236080_0547 1/1 185 252 .. 1 87 [] 81.3 1.2e-22
AM236080_3746 1/1 676 742 .. 1 87 [] 77.5 1.5e-21
AM236080_0031 1/1 629 697 .. 1 87 [] 72.3 4.3e-20
AM236080_0776 1/1 1077 1146 .. 1 87 [] 70.8 1.2e-19
AM236080_0036 1/1 358 423 .. 1 87 [] 67.2 1.2e-18
AM236080_1009 1/1 162 227 .. 1 87 [] 64.1 9e-18
AM236080_1827 1/1 331 399 .. 1 87 [] 58.5 3.5e-16
AM236080_3426 1/1 405 473 .. 1 87 [] 52.6 1.7e-14
AM236080_0682 1/1 532 600 .. 1 87 [] 52.0 2.5e-14
AM236080_2261 1/1 141 205 .. 1 87 [] 50.1 8.6e-14
AM236080_1166 1/1 231 297 .. 1 87 [] 49.5 1.3e-13
AM236080_3120 1/1 312 380 .. 1 87 [] 48.6 2.3e-13
AM236080_2283 1/1 240 305 .. 1 87 [] 48.3 2.9e-13
AM236080_2286 1/1 507 579 .. 1 87 [] 45.8 1.4e-12
AM236080_0680 1/1 139 205 .. 1 87 [] 45.2 2.1e-12
AM236080_0607 1/1 807 872 .. 1 87 [] 45.1 2.2e-12
AM236080_1450 1/1 241 306 .. 1 87 [] 43.6 6.2e-12
AM236080_1886 1/1 265 330 .. 1 87 [] 42.6 1.1e-11
AM236080_0059 1/1 218 284 .. 1 87 [] 41.8 2e-11
AM236080_4110 1/1 238 303 .. 1 87 [] 39.0 1.2e-10
AM236080_0686 1/1 20 83 .. 1 82 [. 36.4 6.5e-10
AM236080_2733 1/1 325 391 .. 1 87 [] 35.9 8.9e-10
AM236080_3896 1/1 372 440 .. 1 87 [] 34.1 3e-09
AM236080_3454 1/1 255 313 .. 1 87 [] 31.0 2.2e-08
AM236080_1651 1/1 167 235 .. 1 87 [] 30.9 2.4e-08
AM236080_2740 1/1 229 287 .. 1 87 [] 30.7 2.7e-08
AM236080_2974 1/1 243 301 .. 1 87 [] 30.3 3.5e-08
AM236080_4199 1/1 233 291 .. 1 87 [] 27.8 1.8e-07

Alignments of top-scoring domains:
AM236080_1453: domain 1 of 1, from 543 to 612: score 98.6, E = 1.5e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHELRTPL+aI+g++e+L+++++ ++l++ +
AM236080_1 543 AKSEFLANMSHELRTPLNAILGFSEILQNQMF------GPLGSLK-- 581

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ey + i++++++ll+ ind+Ld+s+ieag
AM236080_1 582 ---------YDEYARDIHDSGKHLLNVINDILDMSKIEAG 612

AM236080_3593: domain 1 of 1, from 583 to 648: score 96.1, E = 8e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTP+++++g+aelL + t+l+ q
AM236080_3 583 AKSEFLANMSHEIRTPMNGVLGMAELLAK---------TNLDTRQ-- 618

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++i ++++ ll +ind+Ld+s+i+ag
AM236080_3 619 ----------KTFVDIIVKSGNALLTIINDILDFSKIDAG 648

AM236080_2781: domain 1 of 1, from 261 to 330: score 93.6, E = 4e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTPL+aI+g++e++ +e+ ++l ++
AM236080_2 261 AKSRFLASMSHELRTPLNAILGFSEVMSAEVM------GPLANPT-- 299

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey i+r++++ll+Lin++Ldlsrieag
AM236080_2 300 ---------YKEYAGDIHRSGQHLLDLINEILDLSRIEAG 330

AM236080_1392: domain 1 of 1, from 254 to 323: score 85.8, E = 6.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTPL+aI+g++++L e++ ++ + +
AM236080_1 254 AKSRFLAAVSHELRTPLNAILGFSDILIGEYF------GKFENDRQ- 293

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey+ +++++ +ll+ +n +Ld+s+ieag
AM236080_1 294 ----------REYVGLVRESGAHLLSVVNTMLDMSKIEAG 323

AM236080_0413: domain 1 of 1, from 233 to 298: score 85.6, E = 7.8e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks++la++sHE RTPL++I+g+++l+ e t l+ eq
AM236080_0 233 AKSRLLATVSHEVRTPLSGILGMTHLIAE---------TRLTQEQ-- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl +i+++++ l +L++dlLd+s ie g
AM236080_0 269 ----------QNYLASIRQSGHALTQLVEDLLDFSTIEVG 298

AM236080_0547: domain 1 of 1, from 185 to 252: score 81.3, E = 1.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f+an+sHELRTPL+++rg++e+++ +++++ +++
AM236080_0 185 MRSDFVANASHELRTPLASLRGFIETIQG---------PAKNDLKAQ 222

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+++l+++ r++rL++dlL lsr+e
AM236080_0 223 ----------ARFLNIMLDQTTRMSRLVDDLLSLSRLELK 252

AM236080_3746: domain 1 of 1, from 676 to 742: score 77.5, E = 1.5e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ + +lsHELRTPL+a++gya++L++ d++ +++
AM236080_3 676 AKSRYVVGLSHELRTPLNAVLGYAQILER--------DETIPAPR-- 712

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++i+r+ae+l+ Li+ lLd+s+ieag
AM236080_3 713 ----------QSSIKVIRRSAEHLSGLIDGLLDISKIEAG 742

AM236080_0031: domain 1 of 1, from 629 to 697: score 72.3, E = 4.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+ ++s ELR PLt I+g+++lL++ +g ++l+e q
AM236080_0 629 LKNDFVQHVSYELRSPLTNIIGFTDLLRT------PGVGPLTERQ-- 667

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey++ i ++ ll L+nd+Ldl+ +ag
AM236080_0 668 ----------AEYIDHISTSSSVLLTLVNDILDLATVDAG 697

AM236080_0776: domain 1 of 1, from 1077 to 1146: score 70.8, E = 1.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fla +sHE+RTPL+aI+g+++++ + ++ + +
AM236080_0 1077 HKTDFLARVSHEIRTPLNAIIGFSDMMAG------ERFGPIGHPR-- 1115

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ey + i r++++ l+++ndlLd+s+ieag
AM236080_0 1116 ---------YIEYANDIGRSGRHVLDIVNDLLDISKIEAG 1146

AM236080_0036: domain 1 of 1, from 358 to 423: score 67.2, E = 1.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+a++sHEL++PLt++r ++e+L ++s++ +
AM236080_0 358 AIESFAADVSHELKNPLTSLRSAVETLPL----------ARSDDSK- 393

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++i+++++rl+rLi+d+ d sr++a+
AM236080_0 394 ----------KRLMDVIQHDVRRLDRLISDISDASRLDAE 423

AM236080_1009: domain 1 of 1, from 162 to 227: score 64.1, E = 9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef+a l H+LR+PL++I ++a +L++ +++++ +
AM236080_1 162 LREEFIAVLGHDLRNPLASIAAAARILRK---------EKQTDRAI- 198

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ ++ ++ r+++Li+++Ld++r + g
AM236080_1 199 -----------KVLDLMQGSVVRMSALIDNVLDFARGRLG 227

AM236080_1827: domain 1 of 1, from 331 to 399: score 58.5, E = 3.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a++sHE+RTPL+ I ++a+ Ll+ ++++ +e +
AM236080_1 331 LQRQFVAMASHEFRTPLAIIDAAAQRLLR-------KRGAVEPEFL- 369

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ i+ ++ r+ +L + +L r+++g
AM236080_1 370 ----------SDKVDQIRASVTRIVDLMESILSAGRLDTG 399

AM236080_3426: domain 1 of 1, from 405 to 473: score 52.6, E = 1.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +a+++HE+++P+++Ir+ya+ ++++ld ++++
AM236080_3 405 ILGQVAAGVAHEINQPVATIRAYADNARTFLD------RGQTAPA-- 443

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e le+i +er+ ++ ++l +++r + g
AM236080_3 444 ----------GENLESIAALTERIGSITEELKTFARKGRG 473

AM236080_0682: domain 1 of 1, from 532 to 600: score 52.0, E = 2.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef+ +sH+L+ PL ++ ++ Lle+++ ++l+++
AM236080_0 532 DLDEFAYIASHDLKEPLRGLHNHSRFLLEDYE------DKLDADG-- 570

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+++ r ++r+++L+n+lL +sr++ +
AM236080_0 571 ----------VRRLNRLVRLSQRMEKLVNELLYFSRLGRQ 600

AM236080_2261: domain 1 of 1, from 141 to 205: score 50.1, E = 8.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++++l+HE+++PL++Irg+a+lL+ ++ +++
AM236080_2 141 SVTGLASMLAHEIKNPLSGIRGAAQLLEQ---------SAVDDDR-- 176

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ i +e++r+ +L++++ +s +
AM236080_2 177 -----------ALTRLICDETDRIVSLVDRMEVFSDERPV 205

AM236080_1166: domain 1 of 1, from 231 to 297: score 49.5, E = 1.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ a+++H+L+TPL+ +r++++++ + ++ ++
AM236080_1 231 SMRQVSADIAHDLKTPLNRLRLTLDAAVA---------GNDQQADV- 267

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+ +++e++r+++ + lL +s+ieag
AM236080_1 268 ----------SALLDEARHESDRINATFEALLRISQIEAG 297

AM236080_3120: domain 1 of 1, from 312 to 380: score 48.6, E = 2.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a++sHE+RTPL+ I ++a+ L + + t+ s + +
AM236080_3 312 LQRQFVAMASHEFRTPLAIIDAAAQRLCR-------STTNVSGDYV- 350

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +i++++ r+ +L + +L r+e+g
AM236080_3 351 ----------HEKAGVIRSAVVRMVDLMESILASGRLETG 380

AM236080_2283: domain 1 of 1, from 240 to 305: score 48.3, E = 2.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+an++HELRTP+++ ++ a+ ++ e ++l+++
AM236080_2 240 AERAFAANAAHELRTPVAGAIAQAQRIRSETK------EKLTSQR-- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
i+ ++rl r+ + l++l+r+e g
AM236080_2 279 -------------ATEIETTLKRLMRISEKLMQLARAEGG 305

AM236080_2286: domain 1 of 1, from 507 to 579: score 45.8, E = 1.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++ ++ ++HE+++PLt I++ ae +++++ ++ + ++ ++
AM236080_2 507 AWGDVARRIAHEIKNPLTPIQLSAERIQRRY----GKQIDPGDRTV- 548

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++ti+r++ + r+++++ ++r+ +
AM236080_2 549 ---------FDQCTDTIIRQVGDIGRMVDEFSAFARMPKP 579

AM236080_0680: domain 1 of 1, from 139 to 205: score 45.2, E = 2.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+++++H+L+ PL +I+ ++ +L +++l++e+
AM236080_0 139 SLEIFTRAMAHDLKEPLRTIKSFSRILHG--------SAALPAED-- 175

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l+ +l++a+++++Li + ++++ea
AM236080_0 176 ----------RELLDYVLSAADHMEDLIVKVSGFTKLEAS 205

AM236080_0607: domain 1 of 1, from 807 to 872: score 45.1, E = 2.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+a++ H++ +PL+a r+y+++L e + ++
AM236080_0 807 GKTRFFAAAGHDILQPLNAARLYSSALVE---------RMAQSDN-- 842

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ i++++e+ + ++ +Ld+sr+++g
AM236080_0 843 ----------APIVRNIDSALESVETILGAVLDISRLDTG 872

AM236080_1450: domain 1 of 1, from 241 to 306: score 43.6, E = 6.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ n++H+L+TPLt +r a +l+ ++ e+r
AM236080_1 241 GLRQVSDNIAHDLKTPLTRLRNKAADALD----------IADGETR- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +le i++e+++l r n lL +sr eag
AM236080_1 277 ----------RTALEGIISESDQLIRTFNALLMISRVEAG 306

AM236080_1886: domain 1 of 1, from 265 to 330: score 42.6, E = 1.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ L++I+g++e+L++ + + q
AM236080_1 265 AVGQLTGGLAHDFNNLLAVIIGNLEMLEA---------RLAEPGQ-- 300

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+ ++++a+ rL ++lL + r +a
AM236080_1 301 ----------LSLLREAQSAADDGARLTSQLLAFGRRQAL 330

AM236080_0059: domain 1 of 1, from 218 to 284: score 41.8, E = 2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++HEL TPL++I+ a+ +++ el +++r
AM236080_0 218 QLDGLAAAAAHELGTPLATISVVAKEMER----------ELKDDDR- 253

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+re + +++++er+++++++l +ls ++
AM236080_0 254 ---------FREDVMLLRSQSERCRDILRRLTTLSSEGEA 284

AM236080_4110: domain 1 of 1, from 238 to 303: score 39.0, E = 1.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+ n+sH+LRTPL+ Ir+ + l + + s +++
AM236080_4 238 ALRHFTGNASHQLRTPLAIIRTQLALSAR----------AGSLDEA- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + ++++ + +r++ +lL +++i+a
AM236080_4 274 ----------QAAALKGDQAVAHAERILAQLLLMAKIDAA 303

AM236080_0686: domain 1 of 1, from 20 to 83: score 36.4, E = 6.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +fla++sH+L PL I +yaelLl++l+ ++l+ eq
AM236080_0 20 RIKRFLATASHDLQSPLRHIAMYAELLLDDLE------ETLDGEQ-- 58

peLRledpeyreyletilreaerllrLindlLdls<-*
+ l+ i + a+ +rL l+ l+
AM236080_0 59 ----------LQSLRMIMEKAQTAQRLTKALMSLA 83

AM236080_2733: domain 1 of 1, from 325 to 391: score 35.9, E = 8.9e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L +++g++elL + + ++ ++
AM236080_2 325 AIGQLTGGVAHDFNNLLMVVLGNLELLGK---------HVGGDAKA- 361

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ +++ a+r +L ++lL ++r +
AM236080_2 362 ----------TRLVDGAIQGARRGAALTQRLLAFARQQDL 391

AM236080_3896: domain 1 of 1, from 372 to 440: score 34.1, E = 3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ a+lsHE+++PL+a ++y+e + ++d +++e
AM236080_3 372 GLGQMSAALSHEFNQPLAAAKTYTESASV------LIDRGRTAEA-- 410

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +++i ++r+ ++ + l+ ++r ++
AM236080_3 411 ----------RDNIRRIGGLIDRMAAISRHLRNFARKPNE 440

AM236080_3454: domain 1 of 1, from 255 to 313: score 31.0, E = 2.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +l+++sH+LRT Lt ++ + l+ +
AM236080_3 255 QRTAMLSGVSHDLRTILTRFKLQLALAGD------------------ 283

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ + ++++ ++ +++ + ++r e +
AM236080_3 284 ----------NPDLHGLNDDVNDMQTMLEAYMAFARGEVE 313

AM236080_1651: domain 1 of 1, from 167 to 235: score 30.9, E = 2.4e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +++H++++ L+ I+g+++l+++ + + +e+ rl
AM236080_1 167 TIGQLTGGVAHDFNNMLAIIIGNLDLAQR--------RLTGNEDPRL 205

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++ a+r L +lL +sr +
AM236080_1 206 ----------LYSIQNARDGAQRAAVLTARLLAFSRQQPL 235

AM236080_2740: domain 1 of 1, from 229 to 287: score 30.7, E = 2.7e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + la++sH+L TP+t +r+ a+++++ s+e+
AM236080_2 229 ERVQILAAISHDLQTPITRMRLRADMAED------------SPEK-- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++ ++rL++d ++r +g
AM236080_2 262 --------------DKLVHDLAEIQRLVQDGIAYARSAHG 287

AM236080_2974: domain 1 of 1, from 243 to 301: score 30.3, E = 3.5e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++fl +++HELRTP++ +++ ++ + +
AM236080_2 243 KRQRFLIDAAHELRTPIAIMQTRIDGMPD------------------ 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++l+++ rl + ++lLd++r ++
AM236080_2 272 ----------GRERQRLLDDVARLAEAAEQLLDFERNDQA 301

AM236080_4199: domain 1 of 1, from 233 to 291: score 27.8, E = 1.8e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l+++ H+LRTPLt +r+ ae e
AM236080_4 233 DRTRMLSGVGHDLRTPLTRLRMRAERSGE------------------ 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ +l ++ l+ +i++ L + + +
AM236080_4 262 ----------PELRGLMLADIATLSFMIDECLAYFKDAST 291


Histogram of all scores:
score obs exp (one = represents 17 sequences)
----- --- ---
-14 6 0|=
-13 43 3|*==
-12 188 107|======*=====
-11 442 557|========================== *
-10 834 1033|================================================== *
-9 985 1067|==========================================================*
-8 811 799|==============================================*=
-7 591 503|=============================*=====
-6 341 289|================*====
-5 195 159|=========*==
-4 101 85|====*=
-3 60 44|==*=
-2 30 23|=*
-1 18 12|*=
0 8 6|*
1 6 3|*
2 1 1|*
3 1 0|=
4 1 0|=
> 5 38 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 174.3965
P(chi-square) = 6.011e-31

Total sequences searched: 4737

Whole sequence top hits:
tophits_s report:
Total hits: 33
Satisfying E cutoff: 33
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 33
Satisfying E cutoff: 33
Total memory: 34K


Acknowledgements:

This research is funded by:

Developed by: