Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

7 accessions found for Rhizobium leguminosarum bv. viciae 3841  

Data for AM236081  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AM236081.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM236081_0076 CDS_60269-61156 27.2 1e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM236081_0076 1/1 53 111 .. 9 87 .] 27.2 1e-08

Alignments of top-scoring domains:
AM236081_0076: domain 1 of 1, from 53 to 111: score 27.2, E = 1e-08
*->lsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeLRledp
l HE+++ Lt I+gyae++ + + +s
AM236081_0 53 LVHEFNNLLTPIIGYAEMAAD---------ALRSGSSS--------- 81

eyreyletilreaerllrLindlLdlsrieag<-*
r y+e+i+++ +r r ++++L ++g
AM236081_0 82 --RMYVERIRDACDRAKRAVERILMSDMGDEG 111


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-13 5 0|=====
-12 9 3|==*======
-11 16 18|================ *
-10 28 34|============================ *
-9 36 35|==================================*=
-8 23 26|======================= *
-7 13 16|============= *
-6 8 9|========*
-5 10 5|====*=====
-4 3 2|=*=
-3 2 1|*=
-2 0 0|
-1 0 0|
> 0 3 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 7.2968
P(chi-square) = 0.2943

Total sequences searched: 188

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: