hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AM236083.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]
Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM236083_0020 CDS_20661-22586 40.7 2.6e-12 1
Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM236083_0020 1/1 270 335 .. 1 87 [] 40.7 2.6e-12
Alignments of top-scoring domains:
AM236083_0020: domain 1 of 1, from 270 to 335: score 40.7, E = 2.6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I+g++e++++ +l++ +
AM236083_0 270 AVGQLTGGIAHDFNNLLTVISGNLEMIED----------KLPPGNL- 305
peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l ++ +a L +lL + r +
AM236083_0 306 ----------REILGEAQAAAADGAVLTAQLLAFGRRQPL 335
Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-14 1 0|=
-13 4 0|==
-12 10 6|==*==
-11 23 36|============ *
-10 49 67|========================= *
-9 64 69|================================ *
-8 56 51|=========================*==
-7 46 32|===============*=======
-6 29 18|========*======
-5 9 10|====*
-4 5 5|==*
-3 3 2|*=
-2 3 1|*=
> -1 3 -|==
% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 22.8695
P(chi-square) = 0.003536
Total sequences searched: 313
Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K
Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K
